Pairwise Alignments

Query, 381 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  129 bits (325), Expect = 8e-35
 Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 160 NWLGTDNQARDVTARMIYGFRISVLFGLTLTIASALVGVTAGAIQGYFGGWTDLLLQRFI 219
           +W GTD   RD+  R + G RIS++ G+   + + L+G   GA  G+ GG TD ++ R +
Sbjct: 80  HWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRIL 139

Query: 220 EIWSSMPVLYILLIIAAILPPGFFVLLGIMLLFSWVGFVGIVRAEFLRARNFEYVRAARA 279
           EI  ++P +++++++         ++   +   +W+    IVR + L  R+ E++ AA  
Sbjct: 140 EILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHV 199

Query: 280 LGVGNWTIMFRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQG 339
            GV  W I+ RH++PN +     +   ++   I T + L FLG G+     S G ++ +G
Sbjct: 200 CGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEG 259

Query: 340 KNNLQ-APWLGLTAFFTMSIMLSLLIFVGEAVRDAFDPR 377
            N ++ A W  L     M + L    +VG+ +RDA DP+
Sbjct: 260 ANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298