Pairwise Alignments

Query, 364 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

Subject, 352 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  436 bits (1122), Expect = e-127
 Identities = 216/363 (59%), Positives = 277/363 (76%), Gaps = 12/363 (3%)

Query: 1   MGAYILRRLALMIPTIVGIMGISFLVIQFAPGGPVEQVVAQLTGQGDSASDRLSGGGDLM 60
           M AYI RRL L+IPT+V I+ ++F+++Q APGGPVEQ +A L G          GG  + 
Sbjct: 1   MWAYIARRLLLIIPTLVIILLVNFVIVQAAPGGPVEQAIAHLQG---------IGGASVG 51

Query: 61  GQSGGFDESGSKYRGAQGLDPELIKKLEKQFGFDKPPLTRFLEMMWNYIRFDFGDSFFRN 120
           G S     S    R ++GLDP+LIK +EKQ+GFDKP   R   M+ +Y R DFG SFFR 
Sbjct: 52  GSSNTMTNSS---RASRGLDPQLIKDIEKQYGFDKPAHERLWLMLSSYARLDFGKSFFRG 108

Query: 121 SSVIDLIIDKLPVSASLGFWILIISYVISIPLGIKKAVSDGSTFDVWTSGIIIIGYAVPS 180
           ++V DLI++K+PV+ SLG W  +I+Y++SIPLGI+KAV  GS FDVW+S  IIIGYA+P+
Sbjct: 109 ATVTDLILEKMPVTISLGLWATLITYLVSIPLGIRKAVHHGSAFDVWSSTAIIIGYAMPA 168

Query: 181 FLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLNWWQKIIDYFWHLTLPLIALSLSAFAT 240
           FLF + LIV+FAGG+  +WFP+RGLVSDNF+ L+   KI DYFWHL LP+ +L +  FAT
Sbjct: 169 FLFAMFLIVVFAGGTSLNWFPVRGLVSDNFESLSTLGKIADYFWHLVLPVTSLVIGGFAT 228

Query: 241 TTLLTKNSFIDEIKKQYVVTARAKGLSERKVLYGHVFRNAMLIVIAGFPGAFISAFFTGS 300
            T+LTKNSF++EI +QYVVTARAKG+SER+VLYGHVFRNAML+V++G P AFIS FF GS
Sbjct: 229 LTILTKNSFLNEITRQYVVTARAKGMSERRVLYGHVFRNAMLLVVSGIPQAFISVFFAGS 288

Query: 301 LLIENIFSLDGLGRLGYLSVVNRDYPIVFGTLFIFSLMGLVVGLLSDLIYTWIDPRIDFE 360
           LLIE IFSLDGLGR+ Y + V+RDYP+VFG+LFIF+L GL++ L+ DL YT +DPRIDF 
Sbjct: 289 LLIEVIFSLDGLGRMSYEAAVSRDYPVVFGSLFIFTLFGLLIKLVGDLCYTLVDPRIDFA 348

Query: 361 RRD 363
            R+
Sbjct: 349 ARN 351