Pairwise Alignments

Query, 364 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

Subject, 339 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  187 bits (475), Expect = 4e-52
 Identities = 110/354 (31%), Positives = 188/354 (53%), Gaps = 38/354 (10%)

Query: 5   ILRRLALMIPTIVGIMGISFLVIQFAPGGPVEQVVAQLTGQGDSASDRLSGGGDLMGQSG 64
           +LR+LA M+   +GI  I F VI  APG P +          ++  + L+G         
Sbjct: 16  MLRKLAWMVVVFLGITVICFWVIHLAPGSPTDL---------ETTMNPLAGA-------- 58

Query: 65  GFDESGSKYRGAQGLDPELIKKLEKQFGFDKPPLTRFLEMMWNYIRFDFGDSFFRNSS-V 123
                            E  K+LE  +G D+P   ++ + +   +R DFG+S   +   V
Sbjct: 59  -----------------EARKRLESIYGLDQPLYVQYAQWLGRLVRLDFGNSMSSDGRPV 101

Query: 124 IDLIIDKLPVSASLGFWILIISYVISIPLGIKKAVSDGSTFDVWTSGIIIIGYAVPSFLF 183
           ++ I ++LP++  +    L ++ ++++P+G+  A   G  FD   + ++ IG+A+P F  
Sbjct: 102 MERIRERLPLTVGMNVAALFLTLLLAVPIGVASAHWQGGWFDRGMTVLVFIGFAMPGFWL 161

Query: 184 GILLIVLFAGGSFFDWFPLRGLVSDNFDQLNWWQKIIDYFWHLTLPLIALSLSAFATTTL 243
            +LL++ F  G    W PL GL S ++  L+ W K +D   HL LPL   +  + A  + 
Sbjct: 162 ALLLMLFF--GIHLGWLPLSGLTSLDYATLSPWGKFLDVARHLALPLFIYTFGSLAGMSR 219

Query: 244 LTKNSFIDEIKKQYVVTARAKGLSERKVLYGHVFRNAMLIVIAGFPGAFISAFFTGSLLI 303
             +++ ++ +++ Y++TARAKGL  R V++ H  RNA+L VI    G  +     GS++I
Sbjct: 220 FMRSAMLEVLRQDYILTARAKGLPTRTVIFRHALRNALLPVIT-ILGLSLPGLIGGSVII 278

Query: 304 ENIFSLDGLGRLGYLSVVNRDYPIVFGTLFIFSLMGLVVGLLSDLIYTWIDPRI 357
           E+IF+L GLG+L Y +V+ RDYP++ G L + +++     L++DL Y   DPRI
Sbjct: 279 ESIFALPGLGQLFYTAVMARDYPLIMGNLVLGAVLTQAGNLIADLCYGLADPRI 332