Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 611 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  399 bits (1026), Expect = e-115
 Identities = 218/570 (38%), Positives = 312/570 (54%), Gaps = 14/570 (2%)

Query: 41  GELKHPDGFDHFDYVNTKAPKGGTLRLSTSGTFDTLNPLLAKGERATGLSLVYDTLMKST 100
           GE K+P+ F HFDYVN +APK G +     GT+D  N   ++G  A   + +YD LM S 
Sbjct: 40  GEAKYPENFTHFDYVNPQAPKYGKVTFGELGTYDNFNRFASRGVAAANTAELYDPLMFSP 99

Query: 101 EEELSASYGLLAEGVSYPDDIEKATFRLRQDAKWADGKPVTPEDVVFSFEK-AKDLSPQL 159
            +E+ + Y L+A  + Y DD       L  +A++ DGKP+T +DV FSFEK   +  PQ 
Sbjct: 100 ADEIDSYYPLIASKIRYSDDFTWLEIDLNPNARFHDGKPITAQDVEFSFEKFMAEGVPQY 159

Query: 160 ATYYTHVTKAEVSGERDITFTFDEKNNRELPQIVGQLLIVPKHWWEGTGPDGKPRDISRG 219
             YY  V   +   ER +     + N  +L  +     ++PKH+W+        ++++  
Sbjct: 160 RVYYQDVKSVKAIAERTVRIEMKQPNREQLFSLAQSTRVLPKHYWQY-------KNLAEP 212

Query: 220 TLEPVMGSGPYKIAAVSPGSSVTYERRDDYWGKDVNVNVGMNNFKTIAYTFFADQDVEFQ 279
             EP +GSG Y+I    PG SVTY+   DYW KD+ VNVG NNF  I Y ++ D  V  +
Sbjct: 213 LNEPPVGSGAYQIVDFKPGQSVTYKLNPDYWAKDLPVNVGRNNFAQIQYDYYRDDTVMLE 272

Query: 280 AFKSGTVDFRQEASSSRWVTGYDFPAVKEGRVKKEELPNIYRSVGIMQAFVPNMRREKFQ 339
           AFK+G  D R+E  +  W T Y      +G +KKEE+   +++    Q F+ N +R  FQ
Sbjct: 273 AFKAGEFDLREENQAKFWATSYTGRNFDQGLIKKEEIA--HQAPASTQGFIFNTQRPVFQ 330

Query: 340 NPKLRKALNYAFDFEELNRTLAYGQFQRITSFFMGSELASSGLPTGRELEILQELKDQVP 399
           + ++R+ALNYA DFE +N+ L Y Q+QR  S+F  +E  + GLP   EL +L   K+Q+P
Sbjct: 331 DVRVREALNYALDFEWMNKNLFYDQYQRTRSYFQNTEYEAQGLPNAAELAVLTPYKEQLP 390

Query: 400 PEVFTTEYRNPVAGDPAKQRDNLREAVKLMKEAGYELRGNRMVNAATGQQLDMEFLIDSS 459
             VFT  Y+  V     + R  +REA  L+KEAG+EL+   M N  TG+ L  E LI S 
Sbjct: 391 ARVFTETYQPSVTDGSGRIRTQMREAFALLKEAGWELKNKVMTNVKTGEPLSFELLIYSP 450

Query: 460 GMERTILPYVQNLKKIGINATIRTVDASQYTNRTRSFDFDVTIKLWATSANPGNEQADFW 519
             ER  +P  +NL+ +GI   IRTVD +QYT R R  DFD+    ++ +  P       W
Sbjct: 451 TTERIAIPLQKNLQLMGIEMKIRTVDTTQYTKRLRDRDFDMISHGFSANPYPSPNLLIVW 510

Query: 520 GSAAADRQGSNNLAGIKNPAVDALVRKVIFAPNRDEQV-AAARALDRVLLANSYVIPQFY 578
            S   D   S N AG  +P +DAL  ++  +    E++ A   ALDRVL  N Y+IPQ++
Sbjct: 511 NSNYMD--SSYNSAGANHPVIDALTEQIAKSQQDTEKLRALGSALDRVLQWNFYIIPQWH 568

Query: 579 RGEMFIAYWNTLIRPENLPEYGVGFPDAWW 608
                +A W+   RP  LP+Y +G  D WW
Sbjct: 569 LSMYRVAMWDKFSRPSVLPKYSLGL-DTWW 597