Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 543 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 75.1 bits (183), Expect = 7e-18
 Identities = 106/486 (21%), Positives = 194/486 (39%), Gaps = 87/486 (17%)

Query: 120 DIEKATFRLRQDAKWADGKPVTPEDVVFSFEKAKDLSPQLAT---YYTHVTKAE-----V 171
           D +  TF +R+DAKW++G PVT  D V+SF++A D  P  A+   +Y   TK +     +
Sbjct: 95  DNKTFTFHIRKDAKWSNGDPVTAHDFVYSFQRAVD--PATASPYSWYMEYTKMKNAKEII 152

Query: 172 SGERDITFTFDEKNNRELPQIVGQLLIVPKHWWEGTGPDGKPRDISRGTLEPV------- 224
           +GE+D + T   K   +   +      VP           KP  I + T+E         
Sbjct: 153 AGEKDKS-TLGAKAVDDHTLVFELETAVPYFVMMMGHTTVKP--IHKATVEKFGDQWTKP 209

Query: 225 ---MGSGPYKIAAVSPGSSVTYERRDDYWGKDVNVNVGMNNFKTIAYTFFADQDVEFQAF 281
              +G+G Y +        +  +R   YW    + N  +N    + Y    +Q  E   F
Sbjct: 210 ENFVGNGAYVLDKWVVNERLELKRNPQYWD---DKNTVLNK---VTYLPIENQVAEMNRF 263

Query: 282 KSGTVDFRQEASSSRWVTGYDFPAVKEGRVKKEELPNIYRSVGIMQAFVP-NMRREKFQN 340
            SG +    E            P     R+KKE   ++     +   +   N ++  F +
Sbjct: 264 LSGEIQITNE-----------LPLEHFKRLKKEHPESVQVQGQLCTYYYGFNNKKPPFDD 312

Query: 341 PKLRKALNYAFDFEELNRTLAYGQFQRITSFFMGSELASSGLPTGRELEILQELKDQVPP 400
            ++RKAL+YA D + ++  +  GQ Q+  ++F+  E+ +   P             ++P 
Sbjct: 313 VRVRKALSYAIDRDVVSDAIL-GQGQK-PAYFLTPEITAGFSP-------------EMP- 356

Query: 401 EVFTTEYRNPVAGDPAKQRDNLREAVKLMKEAGYELRGNRMVNAATGQQLDMEFLIDSSG 460
                      A     Q++ + EA KL++EAGY               L    L ++S 
Sbjct: 357 -----------AYGKMTQKERIAEAKKLLEEAGYN----------KSNPLKFTLLYNTSE 395

Query: 461 MERTILPYVQNLKK--IGINATIRTVDASQYTNRTRSFDFDVTIKLWATSANPGNEQADF 518
             + I   +Q++ K  +G++  +   +   Y +  R  +FDVT   W    N  +     
Sbjct: 396 NHKKIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCGDYNEASSFLTL 455

Query: 519 WGSAAADRQGSNNLAGIKNPAVDALVRKVIFAPNRDEQVAAARALDRVLLANSYVIP--Q 576
             S+      ++N     +   DA++ K   + + +E+       +++L  +  + P  Q
Sbjct: 456 MLSS-----NTSNDPQYHSAEYDAVIEKAKTSTSEEERQKLYADAEKLLARDMPIAPIYQ 510

Query: 577 FYRGEM 582
           + R  +
Sbjct: 511 YVRSRL 516