Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 92.0 bits (227), Expect = 6e-23
 Identities = 123/551 (22%), Positives = 209/551 (37%), Gaps = 74/551 (13%)

Query: 77  NPLLAKGERATGLSLVYDTLMKSTEEELSASYGLLAEGVSYPDDIEKATFRLRQDAKWAD 136
           NP LA   R T    +Y+ L+   E + +     LAE     DD+   TF +R+  KW+D
Sbjct: 46  NPYLATNLRTT-TDFIYEPLVVFNEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSD 104

Query: 137 GKPVTPEDVVFSFEKAKDLSPQLATYYTH--VTKAEVSGERDITFTFDEKNNRELPQIVG 194
           G+  T +DVV+SF   K   P+L     +  VT  E   E  + F   E N+  +P  + 
Sbjct: 105 GEAFTADDVVYSFGLLK-AKPELDQRGINKWVTSVEKVDEYKVRFRLSEANS-NVPYEIS 162

Query: 195 QLLIVPKHWWEGTGPDGKPRDISRGTLEPVMGSGPYKIAAVSPGSSVTYERRDDYWGKDV 254
            + IV +H W+        +D +  T E  +G+GP+ +            R  +YW    
Sbjct: 163 LIPIVAEHVWKDV------KDPTTFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDA-A 215

Query: 255 NVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEASSSRWVTGYDFPAVKEGRVKKE 314
           N+ V       I     A+ D       +  +D         W + +  P +        
Sbjct: 216 NLEVDCLRVPQI-----ANNDQLLGKIVNSELD---------WTSSF-VPDIDRTYAAAN 260

Query: 315 ELPNIYRSVGIMQAFVPNM------RREKFQNPKLRKALNYAFDFEELNRTLAYGQFQRI 368
              + +      QAF+ N       ++E   N   R+A + A D + +     YG    +
Sbjct: 261 PNHHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGS-GTV 319

Query: 369 TSFFMGSELASSGLPTGRELEILQELKDQVPPEVFTTEYRNPVAGDPAKQRDNLREAVKL 428
             F       +SGL  G   E   +       + F T               ++  + KL
Sbjct: 320 NDF-------ASGL--GYAFEAWSDEATHKKYKGFNTY--------------DVEGSKKL 356

Query: 429 MKEAGY-ELRGNRMVNAATGQQLDMEFLIDS----SGMERTILPYVQNLKKIGINATIRT 483
           + +AG+ ++ G+  V   +G+    E LI S    +    T+   V+ L+++GI A  RT
Sbjct: 357 LAKAGFKDVNGDGFVETPSGK--SFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKART 414

Query: 484 VDASQYTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAADRQGSNNLA--GIKNPAVD 541
            + + Y        +DV    +   A+P       + SA     G    A     +  +D
Sbjct: 415 PEFAVYNQAMLEGTYDVAYTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLD 474

Query: 542 ALVRKVIFAPNRDEQVAAARALDRVLLANSYVIPQF-------YRGEMFIAYWNTLIRPE 594
            L+       +++EQ+A A  + +++  N   IP         Y    F  +W+    P+
Sbjct: 475 GLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSE-ENPK 533

Query: 595 NLPEYGVGFPD 605
             P    G P+
Sbjct: 534 GRPSVWAGIPE 544