Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 606 a.a., extracellular solute-binding protein family 5 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  361 bits (926), Expect = e-104
 Identities = 237/609 (38%), Positives = 325/609 (53%), Gaps = 26/609 (4%)

Query: 13  ALAASALLIPAVASAQSTDVWRKGISTVGELKHPDGFDHFDYVNTKAPKGGTLRLSTSGT 72
           AL A  L +P   +A S      GI+  G+   P  F    Y N  APKGG + L   G 
Sbjct: 14  ALIAGFLAVPGALAAPS-----HGIAMYGDPALPPDFVSLPYANPDAPKGGRIVLGEVGG 68

Query: 73  FDTLNPLLAKGERATGLS-LVYDTLMKSTEEELSASYGLLAEGVSYPDDIEKATFRLRQD 131
           FD+LNP + KG     L  L +++LM    +E  A YGLLAE V    D     F LR +
Sbjct: 69  FDSLNPHILKGRVPWQLRFLAHESLMARNYDEPFALYGLLAESVEVDPDGLWVAFTLRPE 128

Query: 132 AKWADGKPVTPEDVVFSFEKAKDLS-PQLATYYTHVTKAEVSGERDITFTFDEKNNRELP 190
           A+++DG PVT EDV++SFE    +  P+    +  V  AE +G R +  TF E N REL 
Sbjct: 129 ARFSDGSPVTVEDVLWSFETLGTVGHPRYLGAWAQVQSAEATGPRSLRITFTEPN-RELA 187

Query: 191 QIVGQLLIVPKHWWEGTGPDGKPRDISRGTL-EPVMGSGPYKIAAVSPGSSVTYERRDDY 249
            I+G   I+ K  WEG       +D +   L E  + S PY IA   PG  VT  R  DY
Sbjct: 188 LIMGMRPILKKAQWEG-------KDFAESGLDEAPISSAPYVIADFEPGRFVTLRRNPDY 240

Query: 250 WGKDVNVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEASSSRWVTGYDFPAVKEG 309
           W  D+ +  G++N   I   FF D  V F+AFK+G +   +E ++++W   YDFPA++ G
Sbjct: 241 WAADLPIRRGVHNLDEIRMEFFGDAGVMFEAFKAGILTSIRETNTAKWNRDYDFPAMQAG 300

Query: 310 RVKKEELPNIYRSVGIMQAFVPNMRREKFQNPKLRKALNYAFDFEELNRTLAYGQFQRIT 369
            V K  +P+  R  GI   F  N RR  F + ++R AL +AF+FE +NRTL   +  RIT
Sbjct: 301 EVVKSVIPH-ERPSGIT-GFAMNTRRADFADWRVRDALIHAFNFELINRTLNGAEVPRIT 358

Query: 370 SFFMGSELA-SSGLPTGRELEILQELKDQVPPEVFTTEYRNPVAGDPAKQRDNLREAVKL 428
           S+F  S LA   G  TGR  E+L    D +PP      Y  PV+      R N+R A++L
Sbjct: 359 SYFSNSVLAMQDGPATGRVAELLAPYADTLPPGALEG-YTLPVSDGSEANRRNIRAALRL 417

Query: 429 MKEAGYELRGNRMVNAATGQQLDMEFLID--SSGMERTILPYVQNLKKIGINATIRTVDA 486
           M EAGY +    M     G     E L+   SS ++  I  Y ++L+++G++  I TVD+
Sbjct: 418 MDEAGYTIEEGVMTRP-DGTPFTFEILLSQGSSEVQSMINIYAKSLERLGVSVDITTVDS 476

Query: 487 SQYTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAADRQGSNNLAGIKNPAVDALVRK 546
           +QY  RT ++DFD+T      S +PGNEQ  +WGS   D  GS N  GI + AVD L+  
Sbjct: 477 AQYRERTDAYDFDMTYYTRGLSLSPGNEQRLYWGSEGVDIPGSRNWPGIDSAAVDGLIDA 536

Query: 547 VIFAPNRDEQVAAARALDRVLLANSYVIPQFYRGEMFIAYWNTLIRPENLPEYG--VGF- 603
           ++ A ++++ +A  RALDRVL A  YVIP ++     IA+   L  PE LP YG  + F 
Sbjct: 537 MLSAKSQEDYIATVRALDRVLTAGRYVIPIWFNPVSRIAHAADLTYPEALPAYGDWISFH 596

Query: 604 PDAWWSGKA 612
           PD WWS  A
Sbjct: 597 PDVWWSKSA 605