Pairwise Alignments

Query, 258 a.a., ABC transporter, nucleotide binding/ATPase protein (phosphonate) from Agrobacterium fabrum C58

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  134 bits (336), Expect = 5e-36
 Identities = 87/255 (34%), Positives = 136/255 (53%), Gaps = 14/255 (5%)

Query: 1   MSDAPLLKVRDVSKYYGDRAGCRNVSFELYPGEVLAIVGESGSGKTTLLNCISTRLMP-- 58
           MSD  L+++RD+S  + D+   RN+  ++ PGE LA+VGESGSGK+   + I  +L+P  
Sbjct: 7   MSDN-LIEIRDLSVAFNDQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSI-LQLLPEN 64

Query: 59  ---TAGSVEYRMRDGSVRDLYHMGEAERRFLMRTDWGFVHQNPADGLRMAVSAGANVGER 115
              T+GS+ YR ++    D   + E     +       + Q P   L    S    +GE 
Sbjct: 65  EAHTSGSIRYRGQELVGADTQALRELRGNRI-----AMIFQEPMTSLNPLHSVEKQIGET 119

Query: 116 LMAVGNRHYGNIRQSASEWLERVEIGT--DRIDDQPRAFSGGMRQRLQIARNLVTSPRLV 173
           LM          RQ   E L  V I    +R+   P   SGG RQR+ IA  L   P L+
Sbjct: 120 LMLHKGLGGKAARQRILELLTLVGIQNPVERLKAYPHQLSGGQRQRVIIAMALACEPELL 179

Query: 174 FMDEPTGGLDVSVQARLLDLVRGLVNDLGLAVVVVTHDLAVARLLSHRMMVMKGGDVIEH 233
             DEPT  LDV+VQ ++L L++ L   LG+++++++HDL + R ++ R+ VMK G+++E 
Sbjct: 180 IADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNLVRSIAQRVCVMKAGEIVEQ 239

Query: 234 GLTDRVLDDPREPYT 248
              + +   P+ PY+
Sbjct: 240 APCETLFSAPKHPYS 254



 Score =  124 bits (310), Expect = 5e-33
 Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 7/230 (3%)

Query: 25  VSFELYPGEVLAIVGESGSGKTTLLNCISTRLMPTAGSVEYRMRDGSVRDLYHMGEAERR 84
           +S  +  G+ L IVGESGSGK+TL   I  RL+ + GS+ ++   G   D  H+ +   R
Sbjct: 304 ISLSIQRGKTLGIVGESGSGKSTLGQAI-LRLIESEGSIRFQ---GQALD--HLSQKALR 357

Query: 85  FLMRTDWGFVHQNPADGLRMAVSAGANVGERLMAVGNRHYGNIRQSASEWLERVEIGTDR 144
              R     V Q+P   L   +S    + E L                + L+ V +    
Sbjct: 358 -PWRKQMQVVFQDPFGSLSPRMSVQQIISEGLEVHQPSSPEQCEARVIQALKEVGLDPAT 416

Query: 145 IDDQPRAFSGGMRQRLQIARNLVTSPRLVFMDEPTGGLDVSVQARLLDLVRGLVNDLGLA 204
               P  FSGG RQR+ IAR LV  P L+ +DEPT  LD +VQ +++ L+R L     L 
Sbjct: 417 RHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQKQVVALLRQLQQKYDLT 476

Query: 205 VVVVTHDLAVARLLSHRMMVMKGGDVIEHGLTDRVLDDPREPYTQLLVSS 254
            + ++HDLAV R L+H M+V+K G V+E G +  V D P+ PYT+ L+++
Sbjct: 477 YLFISHDLAVVRALAHDMIVIKDGKVVEQGASHDVFDSPQHPYTKELLAA 526