Pairwise Alignments

Query, 346 a.a., transcriptional regulator, AraC family from Agrobacterium fabrum C58

Subject, 337 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

 Score =  137 bits (346), Expect = 3e-37
 Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 2/330 (0%)

Query: 12  VVAGLAAGVSNYARSRGIDIVPICKALDIDPATFSSLTERISLDRFSRLLETCALISGDD 71
           +++  A G+  + +S G D   I  A   D       T R+SLD +   +E  A  + ++
Sbjct: 1   ILSAAATGLLEFIQSEGGDPERILGAAGADCNAIEQPTARLSLDIYCNAMEQAARQTQNE 60

Query: 72  AFGLQCAATFPAGASGAFGYGLISAPTVRSFLRFLQDHVYYATNNSNFTMV-ADATQVTL 130
            FGL+    F     G  GY  +++PTV   LR +    ++    S+  +  AD      
Sbjct: 61  HFGLRFGQQFMPAGLGMLGYLGLTSPTVGEALRNMGAMFHHHQQRSHLGLTQADGLAYVE 120

Query: 131 SWSFAPGIAKRDQYVDLSLAVLVQRLRDILGERVNQIEIGLERQKPINIQLFKERLTRRV 190
                P I +R Q  +LS+ +    LR  LG++ + +EI  E       +  +      +
Sbjct: 121 YRITDPLITQRRQDAELSIGMFFNVLRQALGQQWSPLEIRFEHGALHGKEEHEHIFGAPI 180

Query: 191 SFSQAIHTMRLPASLLDVANPNADERLFELMNLQCRMLRPETSADPTHFIDQVKRYMQMR 250
            FSQ  + + L  S L+   P AD  L  LM    R L    + + T  +D+V+  +++R
Sbjct: 181 QFSQGTNAIVLRGSDLNAPMPGADAHLHSLMRNNLRQLGLIAATEET-LVDKVRAVIRLR 239

Query: 251 LSDAELSLGEIAPYFNLSERSFQRRLAELGTNLNEIKDAIRKNAGFKLLVESDLPVSDIS 310
           L D+E +L EIA    ++  + QRRL   G    E+   +RK+   + L + DL +S+++
Sbjct: 240 LDDSEPTLDEIASALGMANWTLQRRLRTAGLTYQELLLEVRKDMALEYLKDPDLQISELA 299

Query: 311 YRLGYSTPGAFSRSVSRWFGATPTDIRRKH 340
           + LGYS   AFSR+  RW G +PT+ RR+H
Sbjct: 300 FLLGYSEISAFSRAFQRWHGMSPTEWRRQH 329