Pairwise Alignments

Query, 257 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score =  142 bits (357), Expect = 9e-39
 Identities = 82/250 (32%), Positives = 136/250 (54%), Gaps = 5/250 (2%)

Query: 7   IKNSTRIILGILFFVLFFSAWGFATLGGFVSPTFLADPITMLKDGIYLLTDQGFAGDIGM 66
           +KN T  I+GIL +     A         + P   +    +L  G+ +L       +  +
Sbjct: 4   LKNLTLPIIGILAW----EALAIYLNNPVILPKVESVISILLNPGVGILGTGNLIENTIV 59

Query: 67  TIWRVVGGFVLASLIAVPVGIAMGAYKPIEALLEPFVSFARYLPASAFVPLLILWAGIGE 126
           +I RV+ GF +A   A+P+G+ MG Y  I  L +  V   R +P  A+VPL + W GIGE
Sbjct: 60  SIKRVLIGFFIAGAFAIPLGLLMGYYSLINDLFDTTVELLRPIPPLAWVPLALAWFGIGE 119

Query: 127 MQKLLVIFIGAVFQIILMVAVAVAGTRRDLVEAAYTLGAKDRGVVRRVLIPANAPDIAEI 186
                +IFIGA F I++     V      ++EAA TLG   + +++ V++PA++PDI   
Sbjct: 120 SSMHFIIFIGAFFPILINTISGVKSVPVIMIEAAKTLGGSTKDILKSVVVPASSPDILTG 179

Query: 187 LRLVLGWAWTYVIVAELI-GASSGIGYMIINSQALMATGQIIFGIIVIGVIGLISDFAFK 245
           LR+  G AW  V+ AE++ G+ +G+GY+I+ + +L     ++  +I+IG+IG+I D   +
Sbjct: 180 LRVGAGIAWMCVVAAEMLPGSDAGLGYLIMYAYSLSKMNIVVASMIIIGIIGIILDKGLR 239

Query: 246 SLNRKLFAWR 255
            + +K F W+
Sbjct: 240 YIEKKYFCWK 249