Pairwise Alignments

Query, 1782 a.a., glutamate synthase large subunit from Agrobacterium fabrum C58

Subject, 1487 a.a., glutamate synthase large subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  456 bits (1174), Expect = e-132
 Identities = 277/658 (42%), Positives = 381/658 (57%), Gaps = 42/658 (6%)

Query: 938  IRTAPNSIPLETVQKASEITKTLASGAMSHGALVAAAHEAVAHGTNMVGGMSNSGEGGEH 997
            ++T+   +PLE ++ AS++ K   S AMS GAL   AHEA+A   N +GG SNSGEGGE 
Sbjct: 837  LKTSDKPLPLEHIEPASDLYKRFDSAAMSIGALSPEAHEALATAMNRLGGYSNSGEGGED 896

Query: 998  ISRYGTIRASRIKQFASGRFGVWAGYLADPMLEEIEIKIGQGAKPGEGGQLPSPKVTVEI 1057
              R+GT R SRIKQ ASGRFGV   YL +   + ++IK+ QGAKPGEGGQLP  KVT EI
Sbjct: 897  PRRFGTERNSRIKQVASGRFGVTPHYLTNA--DVLQIKVAQGAKPGEGGQLPGHKVTAEI 954

Query: 1058 AAARGGTPGVELVSPPPHHDTYSIEDLAQLIHDAKAARVRVIV--KLVSSEGIGTIAVGV 1115
            A  R   PGV L+SPPPHHD YSIEDLAQLI D K    + +V  KLVS  G+GTIA GV
Sbjct: 955  AKLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQINPKALVSVKLVSEPGVGTIATGV 1014

Query: 1116 AKAGADVINVAGNTGGTGAAAVTSLKYTGRAAEIGIAEVHQALCATGLRAKVLLRCSGAH 1175
            AKA AD+I ++G  GGT A+ +TS+KY G   E+G+AE  QAL A GLR K+ L+  G  
Sbjct: 1015 AKAYADLITISGYDGGTAASPLTSVKYAGSPWELGLAETQQALVANGLRHKIRLQVDGGL 1074

Query: 1176 QTASDVVKSALLGGDSFEFGTTALMMLKCVMAKNCNIK-CPAGLTTNQEA-----FNGDP 1229
            +T  DV+K A+LG +SF FGT  ++ + C   + C++  C  G+ T  E      F G P
Sbjct: 1075 KTGLDVIKGAILGAESFGFGTAPMVAMGCKFLRICHLNNCATGVATQDETLRKDYFKGLP 1134

Query: 1230 RALAQYLMNIAHETREILAGLGLRSLREARGRSDLLHLLDH-PASVGQLDLRAMLAVVEE 1288
              +  Y   +A E R  LA LG+  L +  GR+DLL +++   A   +LDL  +L     
Sbjct: 1135 EMVMNYFKGLAEEVRGYLAELGVEKLTDLIGRTDLLEVVEGMTAKQSKLDLSDLLEAPVS 1194

Query: 1289 VKIDNPVYM-EKDFALDDAFI--ELVRSALVD-SRRENIELGGNRFLNNCNKSVGGQLAV 1344
             + + P+Y  E +   D   +  ++V  AL     ++++EL  N  + N ++S+G +L+ 
Sbjct: 1195 PQ-NLPLYCTEPNTPFDKGALNQKIVEDALAAVENQQSLELYYN--VINTDRSIGARLSG 1251

Query: 1345 DIERMLNHELSDEQLDALPAVKRDSRGRRFLEAGSVRIDTSGSAGQSFGAFCNDGMIMVH 1404
            +I +                      G   +    +++  +G+AGQSFG +   G+ +  
Sbjct: 1252 EIAKRY--------------------GNLGVATSPIKVVLNGTAGQSFGVWNAGGLELYL 1291

Query: 1405 TGTCNDGVGKSACGGTIVVRSPGGGSKETGGNVLVGNFALFGATGGRTFVEGQAGDRFAV 1464
            TG  ND VGK   GG IV+R   G +       ++GN  L+GATGG+ F  G+AG+RFAV
Sbjct: 1292 TGDANDYVGKGMAGGKIVIRPHQGTAFVCNEATIIGNTCLYGATGGKLFAAGKAGERFAV 1351

Query: 1465 RNSGATAVVEGVGDFACEYMTNGAVLNLGSFGKGFGNGMSGGFVYQYDPYGDLPKKVSHD 1524
            RNSG  AV+EG GD ACEYMT G V  LG+ G  FG GM+GGF Y  D  GD   +V+ +
Sbjct: 1352 RNSGTIAVIEGAGDNACEYMTGGIVAILGATGVNFGAGMTGGFAYVLDENGDFQGRVNDE 1411

Query: 1525 SILLGSITGEDEQAAIHNQAVHQLLTLHVAETGSAKAAWLLENWESEQHNFAYGMPRA 1582
            S+   ++T       IH + +  L+  H+ ETGSA A  +L N++     F    P+A
Sbjct: 1412 SVEAVALT----DLYIHQEHLRGLIAEHLEETGSAHAERILANFDEWIPKFYLIKPQA 1465



 Score =  293 bits (750), Expect = 1e-82
 Identities = 237/777 (30%), Positives = 363/777 (46%), Gaps = 46/777 (5%)

Query: 1   MSAEG-VGDGAGVSLDLSLSFFRELTGDAALPAGR-FGVGNFFLPQNPAFHGEAVGIIGN 58
           ++A+G  GDG G+ L    S+ R +  +      + + +G  FL ++P     A  I+  
Sbjct: 46  IAADGKTGDGCGLLLQKPDSYLRLIAEEQHWKLSKQYAIGMLFLSRDPHKAQLAQQIVNQ 105

Query: 59  ALKEQGFSVLLVRDVPVNDTAIRPAAIPYQLPIRQWVFSAPVECATLAEFDWRIHKALLA 118
            L ++  SV   R VP N   + P A+     I+Q   SAP       + + R++ A   
Sbjct: 106 ELAKETLSVAGWRKVPTNPKVLGPIALDSLPDIQQVFISAPAGWRE-RDVERRLYIARRR 164

Query: 119 IEALAYTVPDLAGFYPLSLSARTQVLKGRLNSQEVMPYFCDLTDPRHKVHTMYFHTRFST 178
           IE     + D   FY  SLS +  V KG     ++  ++ DL D R +     FH RFST
Sbjct: 165 IEK---QITDDRDFYICSLSTQVLVYKGLCMPADLPRFYLDLADLRMESAICLFHQRFST 221

Query: 179 NTDPHPSMAQPFRLMAHNGELNTDKKNRLSEAAVALAKNASIVRPKGQS----------D 228
           NT P   +AQPFR +AHNGE+NT + NR    A A  K AS + P  QS          D
Sbjct: 222 NTQPRWPLAQPFRYLAHNGEINTIEGNRQWARARAY-KFASPLLPDLQSAAPFVNETGSD 280

Query: 229 SCRLDQTLQARVMEDGLDLVTAVVSMMPPAWENDDTLSPGVKSMLEYFSLYEEKNDGPAA 288
           S  LD  L    +  G+D+  A+  ++PPAW+N   + P +++  ++ S + E  DGPA 
Sbjct: 281 SSSLDNMLDL-FLAGGMDIFRAMRMLVPPAWQNHPDMDPDLRAFYDFNSKHMEPWDGPAG 339

Query: 289 LIFGDGTIIGARLDRLGLRPLRTVETDDYLCVM-SEAGQIAFPAESVIRRGRIEAGGMLY 347
           ++  DG      LDR GLRP R V T D L  + SE G   +  + V  +GR+  G +L 
Sbjct: 340 IVLSDGRYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYAPDEVSEKGRVGPGELLV 399

Query: 348 YDHTERRAFSTVEALELLASRRDYSSLLSDARVMLGDLPEVPADKQGSPLRYNGDLERHQ 407
            D  + + + + E    L SR  Y   + +    L    ++P DK G        L+ +Q
Sbjct: 400 IDTRKGKIWQSSEIDNDLKSRHPYREWMENNVHKLTPFSQLPDDKVGERSFDADLLKTYQ 459

Query: 408 RYVAYSHNQESFKFLMDPMLASGAEKISAMGYGNAINALSDQEGGVAKYFSQRFAQVTNP 467
           +  A S+  E    ++  +     E + +MG    +  LS +E  ++ YF Q+FAQVTNP
Sbjct: 460 KQFAMSN--EEIDQILRVLGDMAQEAVGSMGDDTPMAVLSSKERLISDYFRQKFAQVTNP 517

Query: 468 PLDSIREADGMTLRVALGAKPNSGAKK---ARQIVVRSPILTHLDMLRIREQPETPVRRF 524
           P+D +RE   M+L  ++G + N   +    A ++   SPIL + DM ++    +   R  
Sbjct: 518 PIDPLREKHVMSLATSIGQEMNVFCETDGHAHRVTFDSPILLYSDMQQLLTLSDQHYRN- 576

Query: 525 EMLYTPVFDAEDANEAALRQAIDGLCGEVVAFAAEEGGIAVVTDRHVSAGRAALPMIMVV 584
             +    FD ++ N   L+QA+  LC +      E   + V++DR ++A R  +P  M V
Sbjct: 577 -TILDINFDPQEKN---LKQAVLDLCDKAEQVVREGTVLVVLSDRALTADRLPIPAAMAV 632

Query: 585 SAINQRLIEEGLRLRISLIVESGQFSSSHHIAAGLGFGASAVYPLGVQFRAEEKFGADAD 644
            A+  RL+E  LR   ++I+E+G     HH A  +GFGA+AVYP    + A E  G   D
Sbjct: 633 GAVQARLVEANLRCDANIIIETGAARDPHHFAVLIGFGATAVYP----YLAYETLGKMID 688

Query: 645 ---------KAFKRFAKAAEKSLMKTMGKVGLCTAESYIGGEFFEPNFLDTSDPVLKRYF 695
                    +  + +     K L K M K+G+ T  SY   + FE   L     V+   F
Sbjct: 689 DGALQKSYREVMQNYQYGINKGLYKIMSKMGISTVASYRCSQLFEAVGLHRD--VVDLCF 746

Query: 696 PNVKTPVGGVTFAVIAQAVADWHRKALSVKGENDIPLLGLFKERAEGAGHSYGTTAV 752
             V T + G  F    Q + +  RKA + +    +   GL K    G  H+Y    V
Sbjct: 747 KGVTTRIQGANFDDFEQDLFNLSRKAWAKR--KPLEHGGLLKYVHGGEYHAYNPDVV 801