Pairwise Alignments

Query, 501 a.a., ABC transporter, nucleotide binding/ATPase protein (sugar/ribonucleotide) from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  287 bits (735), Expect = 5e-82
 Identities = 179/494 (36%), Positives = 278/494 (56%), Gaps = 18/494 (3%)

Query: 5   IELMGIDKKFGAVHANKNINLSVAKGTIHGIIGENGAGKSTLMSILYGFYQADAGEIRVN 64
           + L  I+K F  V A    +L+V  G +  ++GENGAGKSTLM +L G Y  DAG I   
Sbjct: 6   LALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEYQ 65

Query: 65  GKPVTIRDSQAAISAGIGMVHQHFMLVENFTVLENVMLGAE-----GGALLARGRAGARR 119
           G+PV+ +  + +  AGI ++HQ   L+   T+ EN+ LG E     G  L       A +
Sbjct: 66  GQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKADQ 125

Query: 120 ELKRLEDDYGLEVDPDAVIEELPVGLQQRVEILKAMYRGAEILILDEPTGVLTPAEADHL 179
            L RL   +  +     ++ EL +G QQ VEI KA+   ++++I+DEPT  LT  E + L
Sbjct: 126 LLARLNVKHSAKT----LLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESL 181

Query: 180 FKILGVLREQGKTIILITHKLREIMAITDSVSVMRRGEMVATRKTSETSVEELAELMVGR 239
           F ++  LREQG  I+ I+H+L+EI  I D ++V+R G+ +   +  +T+ + L E+MVGR
Sbjct: 182 FNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGR 241

Query: 240 RVLLRVEKGETTPGDVLLSIRNLTVKDSRGVTMVDDVSLDVRAGEIVGIAGVAGNGQSEL 299
           ++  +  +     GD+ L +  LT         V DVS  ++ GEI+G++G+ G G++EL
Sbjct: 242 KLEEQYPRIAAQQGDISLEVIGLTGSG------VHDVSFTLKKGEILGVSGLMGAGRTEL 295

Query: 300 LEAIAGIRKPYSGEIWVDGQKVDRPDPAILRKLGLAHIPEDRHHMGLVLKFEEYENSILG 359
           ++ I G      G I ++G+ V+   P      G+A+I EDR   GLVL     EN  L 
Sbjct: 296 MKVIYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLC 355

Query: 360 YHHDERYGKGPFLNPEAIRKDAVEKIEKYDIRPPNPQLKTANFSGGNQQKIVVAREIERD 419
                  G       E I  D  + I  ++I+ P+ +    N SGGNQQK+ +A+ +   
Sbjct: 356 ALDQLSKGVQIRHADEVIAVD--DFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTK 413

Query: 420 PKMLIIGQPTRGVDIGAIEFIHRRIIEMRDAGKAILLVSVELDEIRSLSDRIMVMFAGRV 479
           PK+LI+ +PTRGVD+GA + I++ I + +  G +I+LVS E+ E+  +SDRI+VM  GR+
Sbjct: 414 PKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRI 473

Query: 480 VGE-KTAEAEEQTL 492
            GE   +EA+++ L
Sbjct: 474 SGEFMASEADQEKL 487



 Score = 90.1 bits (222), Expect = 2e-22
 Identities = 67/246 (27%), Positives = 124/246 (50%), Gaps = 15/246 (6%)

Query: 2   DPAIELMGIDKKFGAVHANKNINLSVAKGTIHGIIGENGAGKSTLMSILYGFYQADAGEI 61
           D ++E++G+      VH   +++ ++ KG I G+ G  GAG++ LM ++YG   ++ G I
Sbjct: 256 DISLEVIGLTGS--GVH---DVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVI 310

Query: 62  RVNGKPVTIRDSQAAISAGIGMVHQHFM---LVENFTVLENVMLGAEGGALLARGRAGAR 118
            +NG+ V     Q  ++ GI  + +      LV   +V EN+ L A     L++G     
Sbjct: 311 NLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQ--LSKGVQIRH 368

Query: 119 RELKRLEDDY----GLEVDP-DAVIEELPVGLQQRVEILKAMYRGAEILILDEPTGVLTP 173
            +     DD+     ++    + +I  L  G QQ+V I K +    ++LILDEPT  +  
Sbjct: 369 ADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDV 428

Query: 174 AEADHLFKILGVLREQGKTIILITHKLREIMAITDSVSVMRRGEMVATRKTSETSVEELA 233
                +++++   + +G +IIL++ ++ E++ ++D + VM  G +      SE   E+L 
Sbjct: 429 GAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLM 488

Query: 234 ELMVGR 239
              VGR
Sbjct: 489 ACAVGR 494