Pairwise Alignments

Query, 377 a.a., molecular chaperone, DnaJ family from Agrobacterium fabrum C58

Subject, 396 a.a., chaperone protein dnaJ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  285 bits (729), Expect = 2e-81
 Identities = 157/394 (39%), Positives = 221/394 (56%), Gaps = 21/394 (5%)

Query: 3   KADFYETLGVSKTADEKELKSAFRKLAMKFHPDKNPDDADSERKFKEINEAYETLKDPQK 62
           K D+YE L V+KTA  +E+K A+RK A+++HPDKNP D ++E KFKE  EAY+ L +P K
Sbjct: 4   KRDYYEVLEVTKTATVEEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSNPDK 63

Query: 63  RAAYDRFGHAAFEN-GGMGG--GGMGGGGFANGGFSDIFEDIFGEMMG------------ 107
           R+ YD+FGHA      G GG  GG GG G +      +F DIFG   G            
Sbjct: 64  RSRYDQFGHAGVSGAAGNGGPFGGFGGEGMSMDDIFSMFGDIFGGRGGGFSGGFGGFSGF 123

Query: 108 GGRARRSSGGRERGADLRYNMEITLEEAFAGKTAQIRVPTSITCDVCSGSGAKPGTQPKT 167
           GG    S   R RG+DLR  +++TL+E   G   + ++   + C+ C G+GA+     +T
Sbjct: 124 GGGGGGSQQRRYRGSDLRVKVKMTLKEISTGVEKKFKLKKYVPCNHCHGTGAEGDGGSET 183

Query: 168 CATCQGSGRVRAAQ----GFFSVERTCPTCHGRGQTISDPCGKCHGQGRVTEERSLSVNI 223
           C TC+GSG V   Q    G      TCPTC+G G+ I + C +C G G V  E  ++V I
Sbjct: 184 CPTCKGSGSVIRNQQTILGTMQTRTTCPTCNGEGKIIKNKCKECGGDGIVYGEEVVTVKI 243

Query: 224 PSGIEDGTRIRLQGEGEAGMRGGPAGDLYIFLSVRPHEFFQRDGADLYCTVPISMTTAAL 283
           P+G+ +G ++ + G+G AG   G  GDL I +   PH    RD  DL   + +S  TAAL
Sbjct: 244 PAGVAEGMQLSMGGKGNAGKHNGVPGDLLILVEEEPHPDLIRDENDLIYNLLLSFPTAAL 303

Query: 284 GGTFDVTTLDGTKSRVTVPEGTQPGKQFRLKGKGMPVLRSAQTGDLYIQIQIETPQKLSK 343
           GG  ++ T+DG K +V +  GTQPGK  RL+GKG+P +    TGDL + I I  P+ L+K
Sbjct: 304 GGAVEIPTIDG-KVKVKIDSGTQPGKVLRLRGKGLPNVNGYGTGDLLVNISIYVPEALNK 362

Query: 344 RQRELLQEFEQLSS-KENNPESTGFFARMKEFFD 376
            ++  L++ E   + K +       F + K FFD
Sbjct: 363 EEKSTLEKMEASDNFKPSTSVKEKIFKKFKSFFD 396