Pairwise Alignments

Query, 501 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 509 a.a., tripartite tricarboxylate transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  409 bits (1052), Expect = e-119
 Identities = 220/491 (44%), Positives = 317/491 (64%), Gaps = 12/491 (2%)

Query: 3   LLNNLALGFVTASSLANLFFCLIGVLLGTLIGVLPGIGATATIAMLLPITFQLEPVSSLI 62
           +L+ +  G  TA    NL   +IG  +GT IG+LPG+G  + IA+++PIT+ LEP S LI
Sbjct: 1   MLDGILQGLATAVMPTNLMMVMIGCFVGTFIGMLPGLGPISAIALMIPITYGLEPASGLI 60

Query: 63  MLAGIYYGAQYGGSTTAILINMPGESSSAVTAIDGYQMARKGKAGAALAIAAIGSFFAGT 122
           ++AG+YYGA +GGST++ILIN PG SS+ VTA DGY MA+KG+AG ALA+AA  SF  GT
Sbjct: 61  LMAGVYYGAIFGGSTSSILINAPGCSSTVVTAFDGYPMAQKGQAGKALALAAYASFTGGT 120

Query: 123 VSTFLVAIFAPPLTAIALEFGAAEYFSLMVVGLVSSIALA-HGSIVKALAMVVLGLLLGL 181
           +S  ++   AP L  ++L F +++YF+LM+VGL +  A A  G ++KA  M VLGL+L  
Sbjct: 121 LSAIMLLFAAPALAKVSLSFQSSDYFALMLVGLSAVAAFAGKGQVIKAWMMTVLGLMLST 180

Query: 182 VGTDIYSGTPRFTLGIREYADGLNFVAVAVGVFGIAEILRNL-----ENERTRSVLIAKV 236
           VG D   G  RFT G+ +  DG +F+ +A+  F + E L  +     +N       +  +
Sbjct: 181 VGIDKGIGVERFTFGLTDLMDGFSFLLLAMATFALGETLMGILKPDADNSANEQEQMKNI 240

Query: 237 SSLMPSKEDFKAMIGPVLRGTAIGSALGILPGGGAILAAFASYTVEKRVS--KNPEEFGH 294
            S+  +KE+ K      LR + +G   G+LPG GA +AAF +Y +E+ ++     EEFG 
Sbjct: 241 GSMKLTKEEVKEAAPVSLRSSILGFFTGVLPGAGATIAAFLAYGMERNLAPKAKKEEFGQ 300

Query: 295 GAVAGVAGPESANNAGAQTSFIPLLTLGIPANPVMALMIGAMIIQGIVPGPNVATEQPAL 354
           G++ G+  PESANNA +  SF+PLLTLGIP +   A+M+GA+I  GI PGP +  + P +
Sbjct: 301 GSLRGLVAPESANNAASSGSFVPLLTLGIPGSGTTAIMLGALIAYGIQPGPRLFVDHPDI 360

Query: 355 FWGIIASMWIGNLMLVILNLPLIGLWVKLLTVPYYVLFPIIMAFCAIGVYSVNSNVFDLY 414
           FW +I SM++GN++L+ILNLPLI    KLL VP  VL P+I+ F   GVY V+ N  D+Y
Sbjct: 361 FWSVIISMYVGNIVLLILNLPLIPYISKLLAVPRTVLLPMILFFSITGVYLVSFNTMDVY 420

Query: 415 AVAFFGFIGYVLVKLRCEP-APLLLGFVLGPLLEENLRRAMILSRGDPTTFVTRPISATL 473
            +     +G + ++L   P APLLLGF+LG L+EENLRRA+I++ G+ +    RPI  TL
Sbjct: 421 VMILVA-MGAIALRLANFPLAPLLLGFILGGLMEENLRRALIITDGEISFLWERPI--TL 477

Query: 474 LFIALAVLIIV 484
            F  LA++ ++
Sbjct: 478 AFTVLAIVTLL 488