Pairwise Alignments

Query, 998 a.a., DNA polymerase I from Agrobacterium fabrum C58

Subject, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

 Score =  712 bits (1837), Expect = 0.0
 Identities = 418/1001 (41%), Positives = 589/1001 (58%), Gaps = 84/1001 (8%)

Query: 7   LFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVTPTHFAV 66
           L L+DGS +++RAFHA P      + +P NA+ G  NM+  +++   +          AV
Sbjct: 9   LILIDGSSYLYRAFHAYPGTMSNGE-IPTNAIYGVVNMIRSMMRQFASD-------RMAV 60

Query: 67  IFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEADDIIAT 126
           IFD   KTFR+E+YD YKA+R   P++L  Q   + +  RA  LP +  EG EADD+I T
Sbjct: 61  IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120

Query: 127 YARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVIEKWGVGPEKMIDLQ 186
            ARQA   G  V I + DKD+ QLV  N+ + + M +  +    VIEK+G+ PE +ID  
Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180

Query: 187 AMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIK------QQKRRENIIANA 240
           A+ GD  DN+PG+PG+G KTA  LL+  G L+ L A   +I        +   + +  N 
Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240

Query: 241 ELARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS 300
             A+LS QL  ++ DV LE+S + L+ +  +   L++    + F +    +         
Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291

Query: 301 AIDPANVPVQWGADAHGPDLDAPAAAMAGDVSAEGNNRPASAVAPAKRMIGEGSTPADLT 360
                              LD     +  D   + ++   S  A     I E        
Sbjct: 292 -------------------LDGGTGIVTADEQTKTSSVTVSTAATHAAAIPESP------ 326

Query: 361 TARQALFAATKIDTTAYTAIRDIATLDLWIAAAREAGVVAFDTETTSLDPMQAELVGFSL 420
                   A  ID + Y  I +     LW+   ++A + AFDTET +LD M A LVG S 
Sbjct: 327 --------AAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSF 378

Query: 421 AIADNGKDASGTDIRAAYVPLTHKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLLEDEA 480
           A+A+           AAY+P+ H        + D  +  E     A+    LK LLEDE+
Sbjct: 379 AVAEG---------EAAYLPVAHD-------YLDAPQQLERDWVIAQ----LKPLLEDES 418

Query: 481 VLKVAQNLKYDYLLMKRHGVVMRSF-DDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAY 539
             KV QNLKYD  +M R+GV +R    DTML SYV  +    H MD+L+ R+L H+ I++
Sbjct: 419 KAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISF 478

Query: 540 KDVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLVSE-RLTKVYERLERPL 598
           + V G GK+ +TF+ + +++A  YAAEDADVTLRL   + P +  + +L +VY  +E PL
Sbjct: 479 EQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPL 538

Query: 599 VPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNIGSPKQLGDILFGR 658
           VPVL+ +E  G+ +D  +LS  S E+A +    E+  YELAG+ FN+ SPKQL  ILF +
Sbjct: 539 VPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQ 598

Query: 659 MGLPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPET 718
           M LP   KT +G  ST+ +VL++LA +   LP+ ++++R L KLKSTYTD LP  I+P T
Sbjct: 599 MKLPVLQKTPSGTPSTNEEVLQELALD-YPLPKVLIEYRGLAKLKSTYTDKLPKMINPST 657

Query: 719 KRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELR 778
            RVHTSY  A T TGRLSS++PNLQNIPVR  EGR+IR AF++  G K+++ DYSQIELR
Sbjct: 658 GRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELR 717

Query: 779 VLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFG 838
           ++AH++    L +AF +G DIHA TA+E+ GVP++ + SE RRRAKA+NFG+IYG+SAFG
Sbjct: 718 IMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFG 777

Query: 839 LANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSN 898
           LA QL I R EA +Y+ KYFER+PG+  YME T++ A + GYVETIFGRR H PEI S N
Sbjct: 778 LAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRN 837

Query: 899 PSVKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAE-KLSARMLLQVHDELIFEVEEA 957
              +   ERAAINAP+QG+AADII++AM+ ++  +E E     ++L+QVHDEL+FEV+E+
Sbjct: 838 AMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKES 897

Query: 958 EIEKTLPVVVSVMEDAAMPAISMRVPLKVDARAADNWDEAH 998
            + +    V  +ME AA     + VPL  +A   DNW++AH
Sbjct: 898 SLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQAH 934