Pairwise Alignments

Query, 998 a.a., DNA polymerase I from Agrobacterium fabrum C58

Subject, 924 a.a., DNA polymerase A (NCBI) from Rhodospirillum rubrum S1H

 Score =  912 bits (2357), Expect = 0.0
 Identities = 520/1004 (51%), Positives = 637/1004 (63%), Gaps = 86/1004 (8%)

Query: 1   MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT 60
           M +  HL+LVDGSG+IFRA+H++PP+ R +DG PVNAV GF  ML KLL D       + 
Sbjct: 1   MTEPKHLYLVDGSGYIFRAYHSLPPMTR-TDGTPVNAVYGFTAMLMKLLAD-------MD 52

Query: 61  PTHFAVIFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEA 120
             H AVIFD +  +FRNE+Y LYKA R  PPEDL+PQF LIREA RAFN+PCIE +GFEA
Sbjct: 53  ADHLAVIFDKARVSFRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEA 112

Query: 121 DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVIEKWGVGPE 180
           DD+IATYA++A A GA VT++SSDKDLMQLV   V ++D MK++ IG  +V EK+GV P+
Sbjct: 113 DDLIATYAKRARAEGAIVTVVSSDKDLMQLVGEGVALFDPMKNRAIGPAEVFEKFGVAPD 172

Query: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA 240
           K+ID+QA+ GD+ DNVPG+PGIG KTAAQL+ EYGDL+TLLARA EIKQ KRR++++ +A
Sbjct: 173 KVIDVQALAGDAVDNVPGVPGIGVKTAAQLIGEYGDLETLLARAAEIKQPKRRQSLLDHA 232

Query: 241 ELARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS 300
           E AR+S QLV LR DV + ++L +      +   L  FL    F +L  RV         
Sbjct: 233 EAARISLQLVRLRDDVEVSETLADFATAEPDAEVLAGFLAENGFRSLLARVT-------- 284

Query: 301 AIDPANVPVQWGADAHGPDLDAPAAAMAGDVSAEGNNRPASAVAPAKRMIGEGSTPADLT 360
                       A AH                A+    P  A APA              
Sbjct: 285 ------------AVAH----------------AKAGTTPQPAAAPAD------------- 303

Query: 361 TARQALFAATKIDTTAYTAIRDIATLDLWIAAAREAGVVAFDTETTSLDPMQAELVGFSL 420
                           Y  +  +A L +WIA AR AG+VA DTET SL   +A LVG SL
Sbjct: 304 --------------DDYVLVNTLAELGVWIAKARAAGLVAIDTETDSLKARRATLVGVSL 349

Query: 421 AIADNGKDASGTDIRAAYVPLTHKTGSGGDLFSDGIKLAEGQAPF-AEALERLKDLLEDE 479
           AI         T  RA Y+P  H       L  DG           A AL  L DLL D 
Sbjct: 350 AI---------TPGRACYIPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLLRDP 400

Query: 480 AVLKVAQNLKYDYLLMKRHGVV-MRSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIA 538
            VLKV  NLK+D  ++   G+  +   DDTM++SYVL+     HGMD L+   LG   I 
Sbjct: 401 GVLKVGHNLKFDLHVLANAGLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRRTIT 460

Query: 539 YKDVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERPL 598
           +++V G GK  ITFD V +DKA AYAAEDADVTLRL++ L+ RL+ E + +V+E L+RP+
Sbjct: 461 FEEVCGKGKGQITFDQVPLDKAVAYAAEDADVTLRLYLLLRDRLLKEHMVRVHETLDRPM 520

Query: 599 VPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNIGSPKQLGDILFGR 658
           V +L  ME  G+ VD   L  LSG+ A++    E++I+ LAG  FN+ SPKQLG++LF  
Sbjct: 521 VRILTDMEAAGVRVDALRLKALSGDFAKRMGDLEDQIHALAGHAFNVASPKQLGEVLFEE 580

Query: 659 MGLPGGSKT-KTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPE 717
           M L GG K+ KTG WST AQVL+ LAAEG +LP +++DWRQ  KLK TYTDAL + I   
Sbjct: 581 MSLTGGKKSRKTGAWSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDER 640

Query: 718 TKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIEL 777
           T RVHT+Y L  T TGRLSS++PNLQNIPVR+  GRKIR AFI+ PGH L+SADYSQIEL
Sbjct: 641 TGRVHTTYGLTVTATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIEL 700

Query: 778 RVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF 837
           R++AHVA I  LR AF  G DIHA+TAS++FGVPVEGM   VRR+AKAINFGIIYGISA 
Sbjct: 701 RLVAHVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISAH 760

Query: 838 GLANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSS 897
           GLA QL + R EA  +I  YF RFP IR YME  K  AR  G+V T FGRR   P I+  
Sbjct: 761 GLAQQLGVGRPEAAAFITAYFARFPEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDK 820

Query: 898 NPSVKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAEKLSARMLLQVHDELIFEVEEA 957
           NP+ +AF ER AINAPIQG AADII+RAMI + PALE   L+ RMLLQVHDELIFE  EA
Sbjct: 821 NPAARAFAERQAINAPIQGGAADIIKRAMIALPPALEQAGLATRMLLQVHDELIFEAPEA 880

Query: 958 EIEKTLPVVVSVMEDAAMPAISM---RVPLKVDARAADNWDEAH 998
           E E    +V  VME A           VPL+VD   A +W EAH
Sbjct: 881 EAETAAALVKRVMETAVTLTDDQGERTVPLEVDTGIAASWAEAH 924