Pairwise Alignments

Query, 764 a.a., penicillin-binding protein from Agrobacterium fabrum C58

Subject, 835 a.a., penicillin-binding protein 1A from Vibrio cholerae E7946 ATCC 55056

 Score =  182 bits (461), Expect = 8e-50
 Identities = 109/317 (34%), Positives = 174/317 (54%), Gaps = 11/317 (3%)

Query: 70  FIRSLFYWCIVLGIWGGIGVAGLVLYYGARMPSASSWSIPERPPNVKIVSVNGSVLANRG 129
           FI+ L  + ++  I G   + G   Y  + +P  ++    +    +++ S +G ++A  G
Sbjct: 13  FIKRLLVFSLICIILGVTTIFGFYFYVKSDLPDVATLRDVQLQTPMQVFSQDGKLIAQFG 72

Query: 130 TTGGEALALEDMSPYIPQAVMAIEDRRFYSHFGVDPLGLGRAIVTNVLTGRAVQGGSTLT 189
                 L LE+M   + +AV+A ED R+Y H+G DP+G+ RA    + +G A QG ST+T
Sbjct: 73  EKRRIPLKLEEMPKELIEAVIATEDSRYYEHYGFDPIGITRAAFAVLASGSASQGASTIT 132

Query: 190 QQLAKNLFLSPDRTLERKVQEVLLSFWLEHEFTKDQILAMYLNRVYFGSNAYGVEAASRR 249
           QQLA+N FLS ++ + RKV+E+ ++  +E   +K +IL +YLN++Y G  +YGV AA++ 
Sbjct: 133 QQLARNFFLSNEKKVMRKVKEIFIAIHIEQLLSKQEILELYLNKIYLGYRSYGVGAAAQA 192

Query: 250 YFNKSARDVNLGEAAMLAGLLKAPSRLSPARDPQAAEERAQVVLQSMRDVGFITDDEIKT 309
           YF K  +D+ LGE A++AGL KAPS ++P    + A  R  VVLQ M D  +IT  E   
Sbjct: 193 YFGKEVKDLTLGEIALIAGLPKAPSTMNPIYSVERATNRRNVVLQRMLDEKYITKAEYDA 252

Query: 310 AMSQPPTKAKRFWSGAE-----HYAADMV---LEEVRGLVGEVKQDIVVDTTIDPNLERD 361
           A ++P       + GAE      Y A++    + E  G        + V TT+D  L+R 
Sbjct: 253 ARAEPVLPK---YHGAEIELNAPYVAEIARAWMVERYGEEAAYTSGMNVYTTVDSKLQRA 309

Query: 362 AEKALTHVLQGDGKKQG 378
           A +A  + L    ++ G
Sbjct: 310 ANQAAINNLLAYDERHG 326



 Score =  127 bits (320), Expect = 2e-33
 Identities = 91/303 (30%), Positives = 142/303 (46%), Gaps = 44/303 (14%)

Query: 391 GAIRAVVGGADYAQSQFNRAVKAKRQPGSAFKPFVYVAALESGLTPYTIRNDGPVRIGN- 449
           GA+ A+VGG ++  ++FNRA ++ RQ GS+ KPF+Y AAL  GLT  T+ ND P+   + 
Sbjct: 453 GAVTALVGGFNFVHNKFNRATQSVRQVGSSIKPFIYSAALNKGLTLATLINDAPINQWDE 512

Query: 450 -----WTPENYEKKYRGEVTLATALANSLNTIAAQLVMEVGPERVTQVAHRMGIE-SELQ 503
                W P+N    Y G   L   LA S N +A +++ EVG +   +   R G +  +L 
Sbjct: 513 SQGTAWRPKNSPPTYTGPTRLRIGLAQSKNVMAVRVLREVGLDETREYLTRFGFKLDQLP 572

Query: 504 NNASIALGTSEVSLMELTASYAPFMNGGYKATPHIVKRITDADGKVLY------------ 551
            + +IALG   ++ +++   ++ F N GY   P  + R+ +  G + +            
Sbjct: 573 RSETIALGAGSLTPVQMAQGFSVFANNGYFVEPFYISRVENPFGNIEFSAEPKVVCHREC 632

Query: 552 --------ENKYDNP--PRVLSEEIAATMNGML-----------SRVITEGTG-KAARLQ 589
                   E    +P  P+V+SE+ A     ML           S     GTG +A  L+
Sbjct: 633 SSELDEFAEQDAASPYAPKVISEQNAFLTREMLYSNIWGGGEWSSDTGWNGTGWRAQALK 692

Query: 590 GWQAAGKSGTTQSFRDALFVGYTSNLTTGVWFGNDDGTSMKKVTGGGLPARAWKDFMTAA 649
                GK+GTT   +DA + GY   +    W G DD +   +  G   P R  +D ++ A
Sbjct: 693 RRDIGGKTGTTNDSKDAWYNGYAPGIVGVAWVGFDDHS---RNLGKTAPNRNIEDDVSGA 749

Query: 650 HSG 652
            SG
Sbjct: 750 ESG 752