Pairwise Alignments

Query, 315 a.a., tRNA pseudouridine 55 synthase from Agrobacterium fabrum C58

Subject, 333 a.a., RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 from Methanococcus maripaludis S2

 Score =  101 bits (252), Expect = 2e-26
 Identities = 84/292 (28%), Positives = 128/292 (43%), Gaps = 44/292 (15%)

Query: 18  SGWLILDKPLDFGSTEAVSKIKWLFNAQKAGHAGTLDPLASGMLPIALGDATKTVPYVMD 77
           +G +++DKP    S E  + ++ + N  KAGH GTLDP  +G LP+ALG+ TK VP    
Sbjct: 30  TGLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHI 89

Query: 78  GRKIYEFTVTWGEQRATDDLEGEVVESSDQRPEEQAIRDILPNYTGVIMQTPPQFSAIK- 136
             K Y   +   +       + E+V+          I +I   +TG I Q PP  +A+K 
Sbjct: 90  PPKEYVCLMHLHD-------DAELVD----------IENIFKEFTGRIHQRPPLKAAVKR 132

Query: 137 -IAGERAYDLARDGETVEIPAREVEIHRLTLLACPDADTAHFEVECGKGTYVRALARDMG 195
            +   + Y++    E +EI  R++                 F  +C  GTY+R L  DMG
Sbjct: 133 SLRIRKIYEI----EILEIDGRDI----------------LFRTKCQSGTYLRKLVDDMG 172

Query: 196 RDLGCFGHISELRRTMVAPFGEDMMVPLETLTALEAIEDRDERLEALDAFLIDTAEALSS 255
             LG   H+ ELRRT+  PF E+  V L+ L         D   E L   +      L  
Sbjct: 173 EALGTSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDGNEEELRKIVKPLEYGLQH 232

Query: 256 LPRLIINDDQAHRLKMGNPILLRG-----RDAPANHPEAYATAQGKLVAIGE 302
           L ++II D     +  G  +   G     +    +      T +G+ VA+G+
Sbjct: 233 LKKIIIKDSAVDAVCHGATLYSSGISKIEKGLGTDEVVLIETLKGEAVAVGK 284