Pairwise Alignments

Query, 713 a.a., polyribonucleotide nucleotidyltransferase from Agrobacterium fabrum C58

Subject, 555 a.a., ribosomal protein S1 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 59.7 bits (143), Expect = 4e-13
 Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 33/262 (12%)

Query: 449 LALMDAGVPLAKPVAGIAMGLILEGERF----AVLSDILGDEDHLGDMDFKVAGTADGIT 504
           + L+DAG+    P+           E+F     VL   +GDE     +D  +    DG  
Sbjct: 35  MVLVDAGLKSESPIPA---------EQFKNAQGVLEIAVGDE-----VDVALDSVEDGFG 80

Query: 505 SLQMDIKIAGITEE--IMKIALEQAQGGRKHILGEMANAITESRGQLGEFAPRIEVMNIP 562
             Q+  + A   E   +++ A E A+     I G++    T     +  F P   V    
Sbjct: 81  ETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGIRAFLPGSLV---D 137

Query: 563 VDKIREVIGSGGKVIR-EIVEKTGAKINIEDDGTVKIASASGKEIEAARKWIHSIVAEPE 621
           V  +R+      K +  ++++    + N+       I S S  E +A       ++   +
Sbjct: 138 VRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDA-------LLENLQ 190

Query: 622 VGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTSDVVKEGDKVWVKLMGFD 681
            GQ  +G V    D+GAFV+  G  DGL+HI+ +A +RV   S++V  GD++ VK++ +D
Sbjct: 191 EGQAVKGIVKNLTDYGAFVDLGGV-DGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYD 249

Query: 682 -ERGKVRLSMKVVDQATGKEVA 702
            ER +V L +K + +    E++
Sbjct: 250 RERTRVSLGLKQLGEDPWLEIS 271



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 614 HSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTSDVVKEGDKV 673
           ++ +A+ + G I  GTV      G  V      +G + ++ ++ ER+   S V   GD +
Sbjct: 442 NAYLADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAI 501

Query: 674 WVKLMGFDERGK-VRLSMKVVDQATGKEVAADKKDGEAA 711
             K MG D + + + LS+K  D+A  KEV A     E A
Sbjct: 502 EAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLNKQEDA 540



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 623 GQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTS-DVVKEGDKVWVKLMGFD 681
           G    G +    DFG F+   G  DGLVH+S ++     + +    K+GD++   ++  D
Sbjct: 364 GDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVD 423

Query: 682 -ERGKVRLSMKVVDQATGKEVAADKKDG 708
            ER ++ L +K  +        ADKK G
Sbjct: 424 PERERISLGVKQTEDDPFNAYLADKKKG 451



 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 612 WIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLA-SERVAKTSDVVKEG 670
           W+      PE  ++  G V    D+G FV      +GLVH+S++  + +    S VV  G
Sbjct: 267 WLEISKRYPENTKL-TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLG 325

Query: 671 DKVWVKLMGFD-ERGKVRLSMK 691
           D+V V ++  D ER ++ L +K
Sbjct: 326 DEVEVLVLDIDEERRRISLGLK 347