Pairwise Alignments

Query, 375 a.a., recF-like protein from Agrobacterium fabrum C58

Subject, 360 a.a., DNA replication and repair protein RecF (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (286), Expect = 3e-30
 Identities = 100/375 (26%), Positives = 169/375 (45%), Gaps = 23/375 (6%)

Query: 5   VSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAVLSDV 64
           +SLSRL +  FRN A+A L L +   ++ G NGSGKT++LEA+ FL  GR  R  +   V
Sbjct: 1   MSLSRLHIDSFRNIASAQLQLGDGLNLIYGQNGSGKTSILEAIFFLGMGRSFRSHLSQRV 60

Query: 65  TRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDHLRVL 124
             +  +    ++FA ++  + E  IG      GE     +++NG  VK +  L + L + 
Sbjct: 61  --IQNDQDKLTLFAQLEQGEQETKIGLRRYRSGET---EVKMNGEKVKRLSTLAETLPIQ 115

Query: 125 WLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLL-SEGRFDPV- 182
            +TP    L       RR+F+D      D       ++  + ++ RN++L SE  +  + 
Sbjct: 116 VITPESFSLLFEGPKSRRQFIDWGAFHTDKSFYTAWANVRRILKHRNQMLKSETPYQQIQ 175

Query: 183 -WLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRPA 241
            W    +K++      +   R   +G L   ++G       P   + ++           
Sbjct: 176 FW----DKELVRYAEIVTEIRKRYVGSLNERLKGII-EEFLPQVDVKVS-------FTRG 223

Query: 242 VDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGLV 301
            D + +Y  +L+    RD AAG T  GPH+ DL +R     ++ +  S G+ K L+  L 
Sbjct: 224 WDSKTDYQTLLQAQYPRDLAAGHTASGPHKADLRLRVGTLPVQ-DALSRGQLKLLVCALR 282

Query: 302 LAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTD--AAMFSAL 359
           +A  +L         + L+D++ + LD   R  L   +   G Q F+T  +  A M S  
Sbjct: 283 IAQGKLLKQQIDKNSIYLVDDLPSELDARHRQLLLQQLSDTGAQVFVTAIEPAAIMDSLN 342

Query: 360 GERAQFFNVSHGGIT 374
               + F+V  G +T
Sbjct: 343 TPPVKVFHVEQGRVT 357