Pairwise Alignments

Query, 693 a.a., ribonucleoside-diphosphate reductase 2 alpha chain from Agrobacterium fabrum C58

Subject, 1214 a.a., vitamin B12-dependent ribonucleotide reductase NrdJ from Phaeobacter inhibens DSM 17395

 Score = 49.7 bits (117), Expect = 8e-10
 Identities = 66/288 (22%), Positives = 106/288 (36%), Gaps = 34/288 (11%)

Query: 322 KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN--PVAGRISMSNLCSEILQVSEASEF 379
           K +KAR+ ++ +    +    P I F DTVN  +  P  G I  SN CSE + +      
Sbjct: 422 KTVKARDLWEKVGHAAWACADPGIQFHDTVNEWHTCPSDGEIRGSNPCSEYMFLD----- 476

Query: 380 NADLSYSHMGKDISCNLGSLNIASAMDSADF-GKTIETSIRALTAVSDMS-HISSVPSVE 437
                      D +CNL SLN+ + +    F  +    + R  T   ++S  ++  PS E
Sbjct: 477 -----------DTACNLASLNLLTFLKDGVFQAEDYMHACRLWTVTLEISVMMAQFPSKE 525

Query: 438 KGNDA--SHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYTVTYHAIRASNRLAVER 495
               +     +GLG  N+ G L      Y S EG          +T  +   S  +A E 
Sbjct: 526 IAQRSYDFRTLGLGYANIGGLLMNMGFGYDSAEGRALCGALTAIMTGVSYATSAEMASEL 585

Query: 496 G----------QSFKGFENSKYASGDYFDKYTDREWLPATEKVRDLFEKAGIAIPTQEDW 545
           G             +   N + A+    D Y      P      +  +   +A      W
Sbjct: 586 GPFARHEQNASDMLRVIRNHRAAAHGSVDGYEGLAVKPVPLDSANCPDPR-LAELAMSSW 644

Query: 546 TALKQDVMASGLYNQNLQAVPPTGSISYI-NHSTSSIHPIVSKIEIRK 592
               +     G  N     V PTG+I  + +  T+ I P  + ++ +K
Sbjct: 645 DEALELGERHGFRNAQATVVAPTGTIGLVMDCDTTGIEPDFALVKFKK 692



 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 156 SCFLLRVEDNMESIGRSIN---SALQLSKRGGGVALSLTNIREFGAPIKQIENQSSGVIP 212
           +CF+  V D++   G  ++      +L K G G   + +++R  G P+     +SSG++ 
Sbjct: 191 ACFIQSVSDDLVQDGGIMDLWVREARLFKYGSGTGTNFSHLRGEGEPLSG-GGKSSGLMG 249

Query: 213 VMKLLEDSFSYANQLGA-RQGAGAVYLHAHHPDIMRFLDTK 252
            +K+ + +       G  R+ A  V + A HPDI +F+D K
Sbjct: 250 FLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFIDWK 290



 Score = 30.8 bits (68), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 514 DKYTDREWLPATEKVRD-----LFEKAGIAIPTQEDWTALKQDVMASGLYNQ 560
           D Y D E++PAT ++R+     +F   G+ +P    W+ +  DV+A   + +
Sbjct: 13  DAYADLEFVPATSEIRNPDGTIVFRLEGVEVPA--GWSQVASDVIAQKYFRK 62



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 620 IGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRRGIK 668
           +G E  I   AAA   +   +S T+   + AT  D  +A   +W  G+K
Sbjct: 851 LGVESHILMMAAAQSFISGAISKTINMPNDATIEDCQKAYELSWSLGVK 899