Pairwise Alignments

Query, 260 a.a., ABC transporter, nucleotide binding/ATPase protein (sugar) from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  161 bits (408), Expect = 2e-44
 Identities = 93/252 (36%), Positives = 146/252 (57%), Gaps = 16/252 (6%)

Query: 4   EPILTARNLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGEI 63
           + IL    + K +  V ALD A  ++YPG ++A++G+NGAGKS+L+K ++G  + D G I
Sbjct: 3   QAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSI 62

Query: 64  RLEGQPVQFRSPIEARKAGIETVYQNLALSPALSIADNMFLGREIRKPGIQGSLFRALDR 123
             +GQPV F+ P +++ AGI  ++Q L L P L+IA+N+FLGRE+  P      F  +  
Sbjct: 63  EYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSP------FGRILW 116

Query: 124 PAMEKFAREKLSELGLMTIQNINQAVETLSG----GQRQGVAVARAAAFGSKVVILDEPT 179
             M + A + L+ L      N+  + +TL G    G++Q V +A+A +F SKV+I+DEPT
Sbjct: 117 DEMHRKADQLLARL------NVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPT 170

Query: 180 AALGVKESRRVLELILDVRSRGLPIVLISHNMPHVFEVADRIHIHRLGKRLCVINPKDYS 239
            AL   E+  +  +I ++R +G  IV ISH +  +FE+ D I + R GK +      D +
Sbjct: 171 DALTDTETESLFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTN 230

Query: 240 MSDAVAFMTGAK 251
               +  M G K
Sbjct: 231 EDGLIEMMVGRK 242



 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 74/243 (30%), Positives = 116/243 (47%), Gaps = 27/243 (11%)

Query: 6   ILTARNLVKRYGRVTA----------------LDNADFDLYPGEILAVIGDNGAGKSSLI 49
           ++  R L ++Y R+ A                + +  F L  GEIL V G  GAG++ L+
Sbjct: 237 MMVGRKLEEQYPRIAAQQGDISLEVIGLTGSGVHDVSFTLKKGEILGVSGLMGAGRTELM 296

Query: 50  KAISGAVTPDEGEIRLEGQPVQFRSPIEARKAGIETVYQNL---ALSPALSIADNMFL-G 105
           K I GA+  + G I L G+ V   SP +    GI  + ++     L   LS+ +NM L  
Sbjct: 297 KVIYGALPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCA 356

Query: 106 REIRKPGIQGSLFRALDRPAMEKFAREKLSELGLMTIQNINQAVETLSGGQRQGVAVARA 165
            +    G+Q        R A E  A +    L  +   +  Q +  LSGG +Q VA+A+ 
Sbjct: 357 LDQLSKGVQ-------IRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKG 409

Query: 166 AAFGSKVVILDEPTAALGVKESRRVLELILDVRSRGLPIVLISHNMPHVFEVADRIHIHR 225
                KV+ILDEPT  + V   + + +LI   ++ G+ I+L+S  MP V  ++DRI +  
Sbjct: 410 LMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMH 469

Query: 226 LGK 228
            G+
Sbjct: 470 EGR 472