Pairwise Alignments

Query, 360 a.a., ABC transporter, membrane spanning protein (sugar) from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (453), Expect = 1e-49
 Identities = 110/322 (34%), Positives = 172/322 (53%), Gaps = 11/322 (3%)

Query: 31  HNKSLLEKFQHFLHSSPAAVPLIVLVLSLAIFGMTLGGKFFSAFSLTLILQQVAIVGIVG 90
           + K LL K       S  A+  +V+V+S       L   FF+  +L  IL+Q ++  I+ 
Sbjct: 19  NRKKLLSKEWLIEQKSLIALLFLVVVVSF------LNPNFFTVDNLLNILRQTSVNAIIA 72

Query: 91  AAQSLVILTAGIDLSVGAIMVLSSVVMGQFTFRYGLPAELSIICGLAVGAFCGFINGVLV 150
              +LVILTAGIDLSVG+++ L             +P  +++   L  GA  G I+G+++
Sbjct: 73  VGMTLVILTAGIDLSVGSVLALCGAFAATLV-AMEVPVLVAVPTALLAGAALGAISGIII 131

Query: 151 SRMRLPPFIVTLGMWQIVLATNFLYSANETIRAQDIVQQAPILQFFGNNIRIGNAVFTYG 210
           ++ ++  FI TL    ++     +Y+    I +      A    +FG    +G  V    
Sbjct: 132 AKGKVQAFIATLVTMTLLRGVTMVYTDGRPI-STGFTDTADTFAWFGTGYTLGIPV---P 187

Query: 211 VLAMVLLVALLWYVLNRTAWGRHLYAVGDDPDAAELAGVNVKRMLTTVYTLSGLICAFAG 270
           V  MV++ A  WY+LN T +GR++YAVG +  A  L+G+NV R+   VY + GL+ A AG
Sbjct: 188 VWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAG 247

Query: 271 WALIGRIGSVSPTAGQFANIESITAVVIGGISLFGGRGSIMGMIFGALIVGVFSLGLRLI 330
             +  R+ S  PTAG    +++I AVV+GG SL GG+G IMG + GALI+G  +  L L+
Sbjct: 248 IIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLL 307

Query: 331 GTDPQWTYLLIGVLIILAVAID 352
                +  +   V+I+LAV +D
Sbjct: 308 DVSSYYQMIAKAVVILLAVLVD 329