Pairwise Alignments

Query, 360 a.a., ABC transporter, membrane spanning protein (sugar) from Agrobacterium fabrum C58

Subject, 337 a.a., galactose/methyl galactoside ABC transporter permease MglC from Vibrio cholerae E7946 ATCC 55056

 Score =  173 bits (439), Expect = 5e-48
 Identities = 110/311 (35%), Positives = 168/311 (54%), Gaps = 15/311 (4%)

Query: 54  VLVLSLAIFGMTLGGKFFSAFSLTLILQQVAIVGIVGAAQSLVILTAGIDLSVGAIMVLS 113
           VL + LAI  +     F S  +L+ IL Q ++  I+    + +I+T G DLS G  + L+
Sbjct: 22  VLFILLAII-VIQEPSFLSLRNLSNILTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLA 80

Query: 114 SVVMGQ-----------FTFRYGLPAELSIICGLAVGAFCGFINGVLVSRMRLPPFIVTL 162
           +V+              F     +P    II    +GA  G +NGV+V+ +++ PFI TL
Sbjct: 81  AVISATLLQSMDNVNKVFPSLGEIPILAVIISVCLIGAIIGLVNGVIVAYLKVTPFIATL 140

Query: 163 GMWQIVLATNFLYSANETIRAQDIVQ-QAPILQFFGNNIRIGNAVFTYGVLAMVLLVALL 221
           G   IV   N LY   +++ A  I         F    IRIG+  F+Y     ++ +  +
Sbjct: 141 GTMIIVYGINSLYY--DSVGASPIAGFDERFTTFTQGFIRIGDFRFSYITFYAIIAIIFM 198

Query: 222 WYVLNRTAWGRHLYAVGDDPDAAELAGVNVKRMLTTVYTLSGLICAFAGWALIGRIGSVS 281
           W + N+T +G++++AVG +P+AA+++GVNV   L  VY LSG+  AF G    GRIGS +
Sbjct: 199 WVLWNKTVFGKNIFAVGGNPEAAKVSGVNVPLTLLKVYALSGVFYAFGGMLEAGRIGSAT 258

Query: 282 PTAGQFANIESITAVVIGGISLFGGRGSIMGMIFGALIVGVFSLGLRLIGTDPQWTYLLI 341
              G    +++I A V+GG+S  GG GSI G++ G LI  V + G+  IG  P W Y++ 
Sbjct: 259 NNLGFLYELDAIAACVVGGVSFAGGVGSIAGVVTGVLIFTVINYGMTYIGVSPYWQYIIK 318

Query: 342 GVLIILAVAID 352
           G +II AVA+D
Sbjct: 319 GSIIIFAVALD 329