Pairwise Alignments

Query, 340 a.a., ABC transporter, substrate binding protein (sugar) from Agrobacterium fabrum C58

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score =  119 bits (297), Expect = 1e-31
 Identities = 92/297 (30%), Positives = 142/297 (47%), Gaps = 22/297 (7%)

Query: 5   VSALLGALALGVSFASAASAADTSVCLITKTDTNPFFVKMKEGATAKAKELGVTLKSYAG 64
           ++ L+ A  L  S +  A A DT V ++  T  NPFFV MK+GA AKAKELG  L     
Sbjct: 6   LTTLISAALLSTSVSFVAQAQDT-VAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDS 64

Query: 65  KIDGDSESQVAAIETCIADGAKGILITASDTKGIVPAVQKARDAGLLVIALDTPLEPVDA 124
           +   D   +++ +E     G K ILI  +D+  +  A++ A  + + V+ LD      + 
Sbjct: 65  Q--NDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEV 122

Query: 125 ADSTFATDNLLAGELIGKWAAGTLGDKAKDAKIAFLNLTPSQPTVDVLRNQGFMKGFGID 184
             S  A+DN++ GE+ G +    +G  AK  ++  +  T +       R +GFM      
Sbjct: 123 V-SHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARE----RGEGFMNA---- 173

Query: 185 VKDINKIGDEDDKRIVGHDVTNGNEEGGRSAMENLLQKDPTINVVHTINEPAAAGAYEAL 244
           VK           +++     + +   G + MENLL  +P +  V   N+  A GA  A+
Sbjct: 174 VKG-------SKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAI 226

Query: 245 KAVGREKDVLIVSVDGGCPGVKNVAEGVIGATSQQYPLLMAALGVEAVKKFADTGEK 301
           +A G  K V+IV  DG   G+  V  G + AT  Q P ++ A+G+E   K    GEK
Sbjct: 227 QASG--KSVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKML-KGEK 280