Pairwise Alignments

Query, 602 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 611 a.a., DNA helicase RecQ from Vibrio cholerae E7946 ATCC 55056

 Score =  541 bits (1395), Expect = e-158
 Identities = 284/600 (47%), Positives = 384/600 (64%), Gaps = 11/600 (1%)

Query: 3   ADPLNILKAVYGYDAFRGRQGEIIQHVVAGNNAFVLMPTGGGKSLCYQIPALAREGMGLV 62
           A P  +L  V+GY  FR  Q E+I+  +AG ++ V+MPTGGGKSLCYQIPAL  EG+ LV
Sbjct: 14  ATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLV 73

Query: 63  VSPLIALMVDQVAALRQAGVRAEALNSDLSPEERRTLWRDVRAGNVDILYAAPETLLKPD 122
           +SPLI+LM DQV  L+  GV AE +NS L+ EE   ++  + AG + +LY +PE +L  +
Sbjct: 74  ISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAE 133

Query: 123 VLDALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDMLIARFPNTPRMALTATADEPTRA 182
            ++ L  + L++IAVDEAHC+SQWGHDFRP Y  L  L  RFPN P MALTATAD+ TR 
Sbjct: 134 FIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRH 193

Query: 183 EILGHLAIDEADAFIAGFDRPNIRYAIMEKDNPRTQLKRFLNGRENESGIVYCLSKRKVE 242
           +I+  L ++E   ++  FDRPNIRY ++EK  P +Q+ R+L  +  + GI+YC S++KVE
Sbjct: 194 DIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVE 253

Query: 243 ETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVH 302
                L      A  YHAGMD   R   Q  FQ  +  I+VATVAFGMGI+KP+VRFVVH
Sbjct: 254 MLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 313

Query: 303 IDLPGSIEAYYQETGRAGRDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLD 362
            D+P +IE+YYQETGRAGRDGLP++ +MLY   D+    R ++E     Q K +E  KL 
Sbjct: 314 FDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQ-KQVESHKLT 372

Query: 363 ALLGLAETAGCRRQVLLSYFGD-RCEPCGNCDTCSSPPDLFEGAIAAQKLLSCIYRTGER 421
           A+   AE   CRRQVLL+YFG+ R +PCGNCD C  PP  F+    A+K LSC+YR  + 
Sbjct: 373 AMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEARKALSCVYRVNQN 432

Query: 422 FGQAYVISVLLGAQDERITKFGHDSITTYGIGKEHDNRTWRAILRQLVALRLIEVDLSGH 481
           FG  YV+ VL G Q+ RI + GHD ITTYGIG++H +  W +I RQL+   ++  +++ +
Sbjct: 433 FGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLIHKGMLYQNITRN 492

Query: 482 GGLSISENGRRFLREKPSLMLRIP---SAPRSTRRDAPRNAMSTALPEADRGLFEALRAK 538
             L ++E  R  LR + ++ L +P   +A R+ + D        +    D+ LF  LR  
Sbjct: 493 STLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSD------KLSGKNYDKKLFAKLRKL 546

Query: 539 RMEIARAQNVPPYVIFHDKTLIELAAARPASAKEMAQIAGVGQTKLERYGPAFLDTIMQH 598
           R  IA  + +PPYV+F D TLI++A   P S  EM  + GVGQ KLE+Y   FLD I +H
Sbjct: 547 RKSIADDEGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEH 606