Pairwise Alignments

Query, 828 a.a., helicase from Agrobacterium fabrum C58

Subject, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

 Score =  582 bits (1501), Expect = e-170
 Identities = 338/818 (41%), Positives = 499/818 (61%), Gaps = 14/818 (1%)

Query: 15  LPVSAVLGDIAQVLAAKKRAVLSAPPGAGKTTLVPLRLLHEDWRGDGKIILLEPRRLAAR 74
           LP+  V+  +   +    + +L A PGAGK+T  PL+LL       GKII+LEPRRLAAR
Sbjct: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGF-HGKIIMLEPRRLAAR 62

Query: 75  AAAGRMAELLRENVGETVGYRMRLDNRVSSKTRIEVVTEGVFARMVLDDPELSGVSTVIF 134
             A  +A+ L E VG+ VGYR+R +NRVS  T++E+VTEG+  RM+ +DPEL GV  +IF
Sbjct: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122

Query: 135 DEFHERSLDGDFGLALALDVQAGLREDLRILVMSATLDVERIGALMGDAPVIQSLGRTFP 194
           DEFHERS+  D  LALAL+VQ+ LREDL+I+VMSATLD + +  L+  A  ++S GR FP
Sbjct: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182

Query: 195 IDIRYEERWQGIHVDEKVAKAITEAHASETGSILAFLPGQAEITRTASRLEGRFPDDTDI 254
           I+IRY+       +   + + I      ETGS+LAFLPG A I +   +L      + +I
Sbjct: 183 IEIRYQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSD-LASEVEI 241

Query: 255 IPLYGNLSQKEQDAAIKPAPGGRRKIVLATSIAETSITIDGVRVVIDSGLQRLPVFEPAT 314
            PLYG +    Q  AI P   GRRK+VLAT+IAETS+TI+G+R+V+DSGL+R   F+  T
Sbjct: 242 CPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARFDLKT 301

Query: 315 GITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAALNAFTPPQILASDLSGLAL 374
           GITRLE VR++++SA+QRAGRAGR EPGI +RL+ + Q         P++L +DL+ LAL
Sbjct: 302 GITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLAPLAL 361

Query: 375 DLAHWGVHDPSALAFLDAPPEAALKESVALLKNLGALDNSGGLTRQGHLMRGLSLPPRLA 434
           +LA WG   PS LA+L+ PP +A  ++  LL+ LG LD    +T  G     L + PR+A
Sbjct: 362 ELAQWGA-QPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLLGVEPRIA 420

Query: 435 AMVIASAEEGAGKKAAMLAVMLTEQGLGGNDIDLDERLRRFFSERSER----AQAARKLA 490
           AM++++   G     + LA+ +  +      ID+   L R+   R  +     Q A+ LA
Sbjct: 421 AMLLSADRLGESALQSALALTVLLEEPERQVIDVQHSLHRWQQGRHPKQKLLIQRAQSLA 480

Query: 491 SRLLDAIGDKTAKAETPSEVGALLLHAYPDRIALQRGAR-GRYVMANGRGAELAETERLA 549
            +L  A    +  +     V  L   A+PDRIA QRG + G++++ANG GA LA  +RL+
Sbjct: 481 HKLDTAFSLSSVDSAWLPLVACL---AFPDRIAQQRGQQTGQFLLANGHGAWLAVEDRLS 537

Query: 550 ASKMLVVADI-TGRAAQPRVLAAAAIERADIEERMPHLIVQQEQLLFDKASGQARARKVT 608
           A+  LV  D+  G+    ++ +A  ++   +E  +P LI + EQ+ +D+ +G+  A    
Sbjct: 538 AADYLVALDLMRGQTQASQIFSALELDIHALERVLPALISRVEQVDWDEKAGRLSAEAQW 597

Query: 609 RLGAIILDETPLPRPDGEQAARALANGVREFGLDILPFSKETLQLRDRIGFLNASI-GDP 667
           R+  ++L    LP PD ++  +AL + VR  GL +L +S++  +   R       +  + 
Sbjct: 598 RIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLARARCAAEWLPEEA 657

Query: 668 WPDVSDAALLARLEEWFVPFQNGARSLQDIRPGSLSEGILSLVPHEVARDLGRLAPTHFE 727
           WP + D  LLARLE W  P+  G  S++ ++  S+ + +   +  E+++ L    PTH  
Sbjct: 658 WPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQLDEWLPTHHL 717

Query: 728 APTGQRHPIRYD-ASEPTLSIRVQELFGLKAHPAIAQGRLPLLLELTSPAHRPIQTTRDL 786
            PTG    IRY    EPTLS+R+QE+FG ++ P +A+G   +++EL SPA RP+Q TRDL
Sbjct: 718 LPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPAQRPLQVTRDL 777

Query: 787 PGFWTGSWKDVRADMRGRYPRHPWPEDPASALPTSRAK 824
             FW G++K+V+ +M+GRYP+H WP+DPA+ + TS+ K
Sbjct: 778 ASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTK 815