Pairwise Alignments

Query, 596 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 687 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.7 bits (234), Expect = 1e-23
 Identities = 88/361 (24%), Positives = 173/361 (47%), Gaps = 18/361 (4%)

Query: 223 VMNALTGVRGAVVRVTEKGELIV-SVAVPVQRFRAVLGVLLLSTQAGDIDKIVHAERLAI 281
           +  AL G + +  R+T   + +V + A P+     V+G ++       I  +      A+
Sbjct: 331 IQKALAGQQTSTWRLTPDNKAVVLAAASPIWIDNNVMGAVVAEETTHGIRTL---RNRAL 387

Query: 282 MRVFGIATLVNIVLSLLL---SSTIATPLRRL-SAAAIRVRRGARTREEIPDFSARQDEI 337
            ++F +   +  + +L L   +S+I+  +R+L   A   +    R R  +    AR DEI
Sbjct: 388 EKLFNVILTIMSMGTLALFFFASSISNRIRKLRDEAENAIDSQGRVRNHLKPSKAR-DEI 446

Query: 338 GNLSIALREMTTALYDRIDAIESFAADVSHELKNPLTSLRSAVETLPRAKTEESKQRLTE 397
           G+LS +   +   L      +E+ ++ +SHEL+ P+  +RS++E L     ++  Q+  +
Sbjct: 447 GDLSRSFASIVGRLGQYTHYLENMSSRLSHELRTPVAVVRSSLEHLNLQTLDKDTQKYVD 506

Query: 398 IIFHDVRRLDRLISDISDASRLDAELARADASPLDLDVLMKGLVDISRQISTKKKSVAID 457
                V RL  +++++S+A+RL+  L +AD +   L  ++ G +    Q++  ++  +I 
Sbjct: 507 RAQEGVSRLSMILNNMSEATRLEQSLTQADVTKFPLSQVVSGCMQ-GYQMTYPEQRFSIK 565

Query: 458 YVADRKAGAKTSFVVNGHDLRIGQIVTNLIENARSFVSEESGRITVRLSRHKDRCIVQVE 517
            V D+        ++ G    I Q++  LI NA  F  + S  I V L++   +  + + 
Sbjct: 566 -VPDQ------PLMMQGVPEYIAQLMDKLIANAIEFCHQGSS-IEVTLTQVGKQATLLIS 617

Query: 518 DNGPGIQAEDIDRIFERFYTDRPASEGFGQNSGLGLSISRQIAEAHGGSLRAENVVDKYG 577
           + GP +  +  ++IF+   + R        + GLGL I+R + E H G++ A N  +  G
Sbjct: 618 NLGPQLPVDMSEQIFDSMVSVRDNQTQEKPHLGLGLYIARLVTEFHQGNILARNRSENDG 677

Query: 578 V 578
           V
Sbjct: 678 V 678