Pairwise Alignments

Query, 881 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 837 a.a., PAS-domain containing protein from Rhodopseudomonas palustris CGA009

 Score =  588 bits (1515), Expect = e-172
 Identities = 327/818 (39%), Positives = 474/818 (57%), Gaps = 9/818 (1%)

Query: 71  LSGT-VLTGSSTVAMAQDGLVAKTSARLFSSG--ETITYSLFVGMLSATLFSVVWLVRQR 127
           L+GT V+  SS    A D L A TS+ L      E +T  + +  L  ++ S + LVR R
Sbjct: 22  LAGTAVMVASSPARAADDHLAAITSSLLLDLNRHEMMTLIIALAALGFSVMSAIMLVRTR 81

Query: 128 GNIEAESSEYRQALAQSHHKIAKYEALISDKSRRIVIWDGVDKRPEFLGQ----LPAETG 183
               A  +  R  L     +  +++AL+  + + ++ W   D RP+  G     LP ET 
Sbjct: 82  QRAVAREAGLRADLQGLQAESDRFQALLFAEPQVLISWAAGDSRPQVSGDTALFLPLETQ 141

Query: 184 VPQADQDFLAFGRWLKPASAGQLEKSIEKLRSHAQSFDLTIETQRGEVIEVQGRVSGGNA 243
             Q  Q  LAFG WL P  A Q++ +++ L    + F L + T  G  IE  GR  GG A
Sbjct: 142 SRQP-QRVLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSIEAMGRAVGGQA 200

Query: 244 FARFIALNNLRAELAELQVERERLLASVSTFQELLDSIEQPVWRRNGEGELTWVNHAYAH 303
             R   L+ +R ELA++    + L       +    +   P+W R  +G L++ N AYA 
Sbjct: 201 VVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRRSDGTLSFANAAYAR 260

Query: 304 AVDARNAEQAVQEKRELLNTVTRQKIRAAATPESPYHDRISTVVSGNRSFFDVVDIKTAG 363
           A DA +A  A+    ELL++  R  +  A      Y  R+  VV G R ++DV  +K +G
Sbjct: 261 ATDASDAADAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVVGGERRYYDVRALKVSG 320

Query: 364 GSAGIAIDATEAETIREELKRVLKSHAETLDHLATPVAIFDGRQRLQFYNQAFASLWGFD 423
           GSAGIA+DATE   +   L+R+  +H  TLD L++ VA+FD ++RL FYN ++  LW  D
Sbjct: 321 GSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRKLWDLD 380

Query: 424 LVLLESGPDNSELLDRLRSAGKLPEQLNWKNWKETALSVYRSLDTKTDLWHLPNGQTLRV 483
            + L+S PD+S +LDRLR+  KLPE+ ++K WK      YR+++ + D+W+LP+G+ + +
Sbjct: 381 RIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEAEKDVWYLPDGRAVSI 440

Query: 484 IATAHPQGGATWVFENLTEQVDLQMRYNTLVKVQGETIDHLAEGVAVFGADGRIRLSNPA 543
           + T +P+GG T++F+++TE +DL+ RY  L+ VQ ET+D+L+E VAVFG++G  +L NP 
Sbjct: 441 VTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPP 500

Query: 544 FRALWGVTADEAETGTHIRAIETACAQSYDGPDGWRAFSQFITSFDDERPSRQGTLELLS 603
           F  +W ++A+  ++  HI AIE  C   +D    W+A    IT  DD R      +E   
Sbjct: 501 FARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITGIDDRRHVLL-KIERKD 559

Query: 604 GLVLDYAIIPLPDAQTMLTFVNMTDSVRAERALKEKNDALLKADELKNDFVQHVSYELRS 663
           G VL    +PLPD  TMLTF ++TD+   ERAL+E+N+AL  AD +K DFV HVSYELRS
Sbjct: 560 GSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKIDFVHHVSYELRS 619

Query: 664 PLTNIIGFTDLLKTPGIGQLTERQAEYLDHISTSSSVLLTIVNDILDLATVDAGIMQLNY 723
           PLT IIGF   L     G LTE+QAEY+++I+TS++ L+ I+N+ILDLA++DAG M LN 
Sbjct: 620 PLTTIIGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAIINNILDLASIDAGAMTLNL 679

Query: 724 SDNDLNELLDDVSVQIADRLQESGISLEIVAPAHLGSLVADHQRLKQILIKLLTNAINFA 783
              D+ + +D  +  I DRL    I+L+I     + S V D +R+ Q+L  LL NAI+F+
Sbjct: 680 GPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQVLYNLLANAIDFS 739

Query: 784 PEGSSVQLSCQRSEGDFVFSVADKGPGIPEDMLKSVFDRFATRGNGGRRTGAGLGLSIVE 843
           P   +V+L+ +R E    F+V D GPGI     + +FD F +   G R  GAGLGLS+V 
Sbjct: 740 PSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDPQGSRHRGAGLGLSLVR 799

Query: 844 SFVSLHHGTVSIDSRPGNGTIVTCRIPSATLPHSIAAE 881
           SFV LH G V ++S  G GT VTC  P        AAE
Sbjct: 800 SFVELHGGKVLVESAVGRGTSVTCEFPIEPAAQRHAAE 837