Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score = 99.0 bits (245), Expect = 2e-24
 Identities = 144/534 (26%), Positives = 231/534 (43%), Gaps = 89/534 (16%)

Query: 379 KKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTSPVQWSIIQSLA 438
           K     L F+DL+ + +  L+ D  G  +  ++       ++DE QDT P+Q+SI   L 
Sbjct: 344 KSTHHWLSFDDLLTQLSAALDNDEQGL-LGERIRTLYPVAMIDEFQDTDPLQYSIFSRLY 402

Query: 439 ADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETKRRVDQVEQAFHRIRL 498
            D+         +  L  +GD KQ+IY+F+GA    + + R++                L
Sbjct: 403 LDY--------PQCGLLMIGDPKQAIYAFRGADIFTYIKARNQVNAHYT----------L 444

Query: 499 PLSFRSTEDVLAAVDQVFSDPKNASGLSADN--EPVEHRSNRAGHPGTVEV-WDM---VA 552
             ++RS+  ++AAV+QVFS   +    S D   +PV      A  PG  +  W +   V 
Sbjct: 445 GTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPV------AASPGADKRHWSLEGQVQ 498

Query: 553 PETT----EDEEDWTAPFDALRESAPATIVARRIAARIADMIGNQTIIEKGVERAVEPGD 608
           P  T    ED +   +  D   + A A   A +I   +           +G   A+E GD
Sbjct: 499 PALTYWWPEDLDKPQSKTDYYAQMAEAC--AAQIQHILTASASGAATFHRG--EAIEAGD 554

Query: 609 ILVLVR--KRAAFV-NALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVLPEDD 665
           + VLVR    A  V +AL+++     ++ ++  D +  +D    QD+  L   V  PED+
Sbjct: 555 LAVLVRTGNEARMVRDALSQQ--GIASVYLSNRDSVFASD--VAQDIERLLLAVWQPEDE 610

Query: 666 LSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSGEETSRLSIVTDKLRHFISL 725
             L A + S LF LT  ++  +    +  E+ W++L                + R +  L
Sbjct: 611 RLLRAAVASNLFALTASELDAL----NNDENEWEQLIA--------------EFRQYRRL 652

Query: 726 SKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFA-----LDHERTGLPGLQA 780
                V     AVLT     +++L    +E    L ++L  +        E     GL  
Sbjct: 653 WSERGVLPMLRAVLTQRHIAERWLAE--SEGERWLTDYLHISELLQQATREIDSDQGLLR 710

Query: 781 FLSVLETD-------SPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSH 833
           FL+    D       S E  +  + +R  V+I+T+H SKGLE P+VF+       F  S+
Sbjct: 711 FLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFL------PFVMSY 764

Query: 834 VPKLRFVEGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRA 887
                    D ++   W+  +G    L ++D+ERL   AED   RLLYVA+TRA
Sbjct: 765 RESSEGKYYDAESATTWVDLTGNEEALAKADQERL---AED--LRLLYVALTRA 813



 Score = 40.4 bits (93), Expect = 9e-07
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 29/135 (21%)

Query: 38  VSANAGSGKTHVLTQRVIRLLLA-GCRPS---------AILCLTYTKAAASEMSSRVFDR 87
           + A+AG+GKT+ +    +RL+L  GC  +          IL +T+T+AA +E+  R+  R
Sbjct: 25  IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84

Query: 88  LAEWATLPDSDLKDRITTIEGKVPD---RIKLAE------ARRLFAKALETPGGLKIQTI 138
           L +           R+    G   D   R  LAE      A  L   A        I TI
Sbjct: 85  LHD----------ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTI 134

Query: 139 HAFCEALLHQFPLEA 153
           H FC+ +L Q   E+
Sbjct: 135 HGFCQRMLTQNAFES 149