Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 119/540 (22%), Positives = 206/540 (38%), Gaps = 115/540 (21%)

Query: 370 RLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTSPV 429
           +L   +++   +   +DF +++ RA  LL R       HY+      HILVDE QDT+ +
Sbjct: 172 KLYTAYQEACDRAGLVDFAEILLRALELL-RGNQHIREHYQAR--FKHILVDEFQDTNAI 228

Query: 430 QWSIIQSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETKRRVDQV 489
           Q++ ++ +A            +  +  VGD+ QSIY ++GAR E   +   E        
Sbjct: 229 QYAWLRMMAG----------AQSNVMIVGDDDQSIYGWRGARVENIEKFTREF------- 271

Query: 490 EQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNEPVEHRSNRAGHPGTVEVW- 548
             + + IRL  ++RST+ +                L A N  + + S R G     ++W 
Sbjct: 272 -PSVNTIRLEQNYRSTKTI----------------LEASNTLIANNSERMGK----QLWT 310

Query: 549 DMVAPETTEDEEDWTAPFDALRESAPATIVARRIAARIADMIGNQTIIEKG-VERAVEPG 607
           D +  E         + + A  E   A  V  +I               KG  E+     
Sbjct: 311 DGLVGEP-------ISVYSAYNELDEARFVVSKI---------------KGWQEQGGTLT 348

Query: 608 DILVLVRKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVLPEDDLS 667
           D  +L R  A   + +  E   + ++       +R  +   ++D L+  R +    DD +
Sbjct: 349 DCAILYRNNAQ--SRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTA 406

Query: 668 LAALLKSPLFNLTEDDVFEIA-ATRSEAESVWQRL------QVLSGEETSRLSIVTDKLR 720
              ++ +P   L +  +  I  A R    ++W         QVL+G   S LS   + + 
Sbjct: 407 FERVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELIN 466

Query: 721 HFISLSKTATVH---DFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLS----FALDHERT 773
                     +H   D       L +  ++  G       + L+E ++    F    E  
Sbjct: 467 ALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQ 526

Query: 774 GLPGLQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSH 833
            +  L AFL+    ++ E + ++  D   V++MT+H++KGLE P+VF+V           
Sbjct: 527 EMTMLTAFLTHAALEAGEGQADEHDD--AVQLMTLHSAKGLEFPLVFMV----------- 573

Query: 834 VPKLRFVEGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRAADHLVV 893
                                G    +  S     +    +E RRL YV MTRA   L +
Sbjct: 574 ---------------------GVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYI 612



 Score = 44.7 bits (104), Expect = 3e-08
 Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 44/194 (22%)

Query: 15  PESWIDWTSARQRLA-SDPASSAWVSANAGSGKTHVLTQRVIRLL-LAGCRPSAILCLTY 72
           P   +D  + +QR A + P  +  + A AGSGKT VL  R+  L+ +    P +++ +T+
Sbjct: 4   PSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTF 63

Query: 73  TKAAASEMSSRVFDRLAEWATLPDSDLKDRITTIEGKVPDRIKLAEARRLFAKALETPGG 132
           T  AA+EM  R+ + +                                        T  G
Sbjct: 64  TNKAAAEMRGRIEELMH--------------------------------------GTASG 85

Query: 133 LKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQ 192
           +   T H  C  +L    L+A +   F ++D      LL    + L+ A + +D     +
Sbjct: 86  MWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPAR 141

Query: 193 ALAYVLDLADESGL 206
            +A+ ++   + GL
Sbjct: 142 QVAWWINNQKDEGL 155