Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 1061 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  143 bits (360), Expect = 9e-38
 Identities = 282/1138 (24%), Positives = 441/1138 (38%), Gaps = 186/1138 (16%)

Query: 26   QRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCR---PSAILCLTYTKAAASEMSS 82
            QR A   A S  V+A AG+GKT +L+QR +  L        P  I+ LT+T+ AA+E+ S
Sbjct: 7    QRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAAELRS 66

Query: 83   RVFDRLAEWATLPDSDLKDRITTIEGKVPDRIK-LAEARRLFAKALETPGGLKIQTIHAF 141
            R+                     +  K PDR   LAE               +I T H+ 
Sbjct: 67   RIRK------------------AVGNKWPDRSDWLAEVE-----------AAQISTFHSL 97

Query: 142  CEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQALAYVLDLA 201
            C  +  + P  A     F++LDD A        ++++LTA   E D         V+D +
Sbjct: 98   CARICREHPAAAGQPADFTILDDLAGKLW----QQTVLTAAMQELDPSCFD----VMDYS 149

Query: 202  D-ESGLEALLSAIIANRSAL-------RSFLHEAKQSGGLDVRLRQEMQIAAGETEETAA 253
            +  S LE LL   + +++ L       R  L +A++     ++   + Q A  +    + 
Sbjct: 150  EWRSLLETLLDDPVRSQALLAVESEQWREVLAQAQRDRLQQIQQSSDWQAAIEDLSGASW 209

Query: 254  EAFWPLPGLSGLVLDTYLTLADEVGGSRVIEVAYALREAKRQPDPVRRMELIEAALLTAK 313
                 L      +L    TL D    +   +  Y         D   +++L +A   +AK
Sbjct: 210  READALSDQIQQILAWSDTLFDPANSNW--QATY---------DEFIKLKLTQAG--SAK 256

Query: 314  GEKKSDAYVINKGMQKSAPDLV---DALTLARDHVVACRNRYRLVRMLVATKSALVLAER 370
                +D   + +   K   D +   ++L   R +     NR +  R+  A        E 
Sbjct: 257  NWGSADTAKLLRTQCKVLRDRLRDEESLLSLRPNEADDWNRDQRSRIYEAF-------ET 309

Query: 371  LIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTSPVQ 430
            ++   +  K+Q   LDF DL   A   L  +   +  HY+  Q   +  VDE QDT+P Q
Sbjct: 310  VLKSIDARKRQDRCLDFNDLERGAVRALESEAVRS--HYQ--QRWRYCFVDEFQDTNPTQ 365

Query: 431  WSIIQSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETKRRVDQVE 490
              I+Q+L                L  VGDEKQSIY F+GA  + F   + + ++      
Sbjct: 366  SQILQALWDP---------QHLILTLVGDEKQSIYGFRGAATQVFRNWQQQIQQHQG--- 413

Query: 491  QAFHRIRLPLSFRSTEDVLAAVDQVFS---DPKNASGLSADNEPVEHRSNRAGHPGTVEV 547
               H + L  SFR+ + +L  ++QVF    DP     L +D +P         HP     
Sbjct: 414  ---HIVTLSQSFRTHQTLLETINQVFEPVLDPYQP--LRSDRQPP--------HPLPPIQ 460

Query: 548  WDMVAPETTEDEEDWTAPFDALRESAPATIVARRIAARIA------DMIGNQTIIEKGVE 601
              ++ PE  +  E              AT +A++I   I       D   NQ        
Sbjct: 461  QLVIEPEEKDSLEQ--------ARIQEATAIAQQIQTWIQQPLLVWDKPSNQ-------H 505

Query: 602  RAVEPGDILVLVRKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVL 661
            R +  GDI +L R+RA  +  +  E+  +  IPV       L +     DL AL  F+V 
Sbjct: 506  RPIAYGDIAILCRRRAP-LETVYGEVLNQAGIPVLVNGGGSLLETPVGYDLQALLEFLVY 564

Query: 662  PEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSGEE-TSRLSIVTDKLR 720
            P +DL+LA LL+SP F L++  +++ A    + +  W   Q        + + I+   LR
Sbjct: 565  PSNDLALATLLRSPAFGLSDAQLYQRA---QQGKGWWSHRQERPDPAFAAAIKILEGLLR 621

Query: 721  HFISLSKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLD--EFLSFALDHERT-GLPG 777
                 S    V  F  A      G    L  L      + D    L+F  +  +   L  
Sbjct: 622  SRFLESPLRLVQQFDRAT-----GYSAVLASLPQAQRLLADWQALLTFLREQPQAHDLEL 676

Query: 778  LQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSHVPKL 837
            L  +   L+     + R   +    V +MT+H SKGLE PVV + D  +K    S    +
Sbjct: 677  LLRYWKQLQQAEVVLPRPVLEAGNAVTLMTLHGSKGLEWPVVIIPDLTAKP--RSQAETV 734

Query: 838  RFVEGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRAADHLVVCGYR 897
             F    G A  +  P         +  + R + A + E RRLLYV  TRA D L++    
Sbjct: 735  LFDTELGVA--LRQPYVKEQAAAYQFFKYRKQQAEDAETRRLLYVGFTRARDLLLLT--- 789

Query: 898  GQKENPECWHAIVKAALAENQDHCQPQAFSADGEEWQGLVWRKSEARPALAPHKPAEPQQ 957
               ++ E    +   A    Q   QP   ++  E         ++A           PQ 
Sbjct: 790  -SPKSAEARSPLDLLAPGLEQAAIQPLDPNSGTEIAVTATLPTADAPLFWQSTAAIAPQY 848

Query: 958  EEDHTLPPGLLAPLPALPSLPRPLSPSGAGTIIDDGADDLAVRSPLFGEKTEASSLALQR 1017
             E   L     A     P+L       G    ID             GE    S   LQ 
Sbjct: 849  SE---LSVSAFADYFRCPALFHFRYTQGHPGAID-------------GEGAGTSDRPLQL 892

Query: 1018 GKLVHRMLQALPDFAESEREEAARRYAERAARFWPATDRERLIQAVLRVLSEPAVQPAFS 1077
            G LVHR L+      +  + EA + Y         A + + LI   L++ S  A +P +S
Sbjct: 893  GLLVHRALE-----LDLRQPEALKPYC--------AAEDQDLIPQALQLASCFATEPVYS 939

Query: 1078 A----NSRAEVSIMGTMTLGRQHYAVSGRIDRLAVERDRVILVDYKTNRVPPREAREL 1131
            A      + EV++   ++ G     + GR D +  +     ++D+KT++ P  E  +L
Sbjct: 940  AVREQAQQREVTLHLELSSG---LVLKGRADLVGAD----WVLDFKTDQQPQPENYQL 990