Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 1187 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  715 bits (1846), Expect = 0.0
 Identities = 468/1187 (39%), Positives = 652/1187 (54%), Gaps = 65/1187 (5%)

Query: 26   QRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMSSRVF 85
            QR A+DP +SAWV+A+AG+GKT VLT RV+RLLLAG  P  +LCLT+TKAAA+EM++RV 
Sbjct: 24   QRRAADPLASAWVAASAGTGKTKVLTDRVLRLLLAGTPPQRLLCLTFTKAAAAEMANRVS 83

Query: 86   DRLAEWATLPDSDLKDRITTIEGKVPDRIKLAE-----ARRLFAKALETPGGLKIQTIHA 140
              LA WATLP+  L+ R+ ++ G +P+  +  E     ARRLFA+ L+ PGGL+IQTIH 
Sbjct: 84   AVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRLFAQVLDCPGGLRIQTIHG 143

Query: 141  FCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAE-----LVQALA 195
            FC+ LL +FPLEA VA HF VLDDR A  L   AR ++L A    +D E     L  ALA
Sbjct: 144  FCQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARDAVLRAARQAEDGEGGDPALAAALA 203

Query: 196  YVLDLADESGLEALLSAIIANRSALRSFLHEAKQSGGLDVRLRQEMQIAAGETEET---- 251
             V     ES  + +++A+   R  L + L     +  L   +R  + +AA +T ET    
Sbjct: 204  VVTGHLSESRFDEVMAALGGQRGRLLAALDHFGGAEALGKAIRDSLGLAADDTPETVLAD 263

Query: 252  -AAEAFWPLPGLSGLVLDTYLTLADEVGGSRVIEVAYALREAKRQPDPVRRMELI---EA 307
              AE  +  P L        L    +    R + +A  + E     DP  R  L      
Sbjct: 264  GCAEGAFDGPSLRAAA--AALIAGGKTDQERGLRIAAFVSET----DPAIREGLFWTYIG 317

Query: 308  ALLTAKGEKKSDAYVINKGMQKSAPDLVDALTLARDHVVACRNRYRLVRMLVATKSALVL 367
            A LT K ++K    +  K ++K+ P  +++L   +  +   R R R      A+++ L L
Sbjct: 318  AFLT-KTDEKPVKTLCTKPVEKAHPGTLESLEAEQQRIWTLRERLRAATTAQASEALLTL 376

Query: 368  AERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTS 427
               ++ D++  K+   ++D+EDLI  A  LL  D A AWV +KLD G+DH+LVDEAQDTS
Sbjct: 377  VGAMLKDYQRRKRALGRMDYEDLILAARRLLAGDGAAAWVLFKLDGGLDHLLVDEAQDTS 436

Query: 428  PVQWSIIQSLAADFFNGESARMG---RRTLFAVGDEKQSIYSFQGARPERFSQERDETKR 484
            P QW+I  +LA +FF  +SAR      RT+FAVGD KQSIY FQGA P+ F   R     
Sbjct: 437  PDQWAIASALAGEFFT-DSARWDGTRPRTVFAVGDRKQSIYGFQGADPKAFEDMRRHFHD 495

Query: 485  RVDQVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADN------EPVEHRSNR 538
             V  +   F  + L +SFRST  VL AV+ VF+      G++ D+      E + H + R
Sbjct: 496  AVSDIGGHFAEVPLNISFRSTRAVLEAVNAVFARQPARDGVAQDDADSGVAEDITHHAFR 555

Query: 539  AGHPGTVEVWDMVAPETTEDEEDWTAPFDALRESAPATIVARRIAARIADMIGNQTIIEK 598
                G VE+W  + P      + W  P + +   +    +A+R+A RI  M     ++E 
Sbjct: 556  KDAGGLVELWPAMEPAPRVVGDPWKPPVERIGLESARARLAKRVAQRIKTMTSGGELLE- 614

Query: 599  GVERAVEPGDILVLVRKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRF 658
               R + PGDILVLVR+R  F   L   LK  K + VAG DR+ LTD +AV DL+ALG+ 
Sbjct: 615  SQGRPIRPGDILVLVRRRGGFEEELVSALKSAK-VEVAGVDRMTLTDQLAVMDLIALGKA 673

Query: 659  VVLPEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSGEETS--RLSIVT 716
            ++LPEDDL+LA++LK PL  L ED +F +A  R   E +W RL+  +G E +  +   + 
Sbjct: 674  LLLPEDDLTLASVLKGPLIGLDEDALFTLARDRGRDERLWDRLRPHAGAENAYGKAMEII 733

Query: 717  DKLRHFISLSKTATVHDFFAAVLT-LHDGRKKFLGRLGNEASDVLDEFLSFALDHERTGL 775
            + LR     +     H+F+A VL    +GR+  LGRLG EA D +DEFL+  L HER G 
Sbjct: 734  EPLR---DRAGRLAPHEFYAHVLDGPLNGRRLLLGRLGPEAEDPIDEFLALTLAHERVGP 790

Query: 776  PGLQAFLSVLETDSPEVKREQDKDR-GEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSHV 834
            P LQ FLS LE  + E+KR+ D+     VRIMTVH SKGL+APVVF+ D  +K   +  +
Sbjct: 791  PALQGFLSWLEKGTVEIKRDLDQGALDAVRIMTVHGSKGLQAPVVFLPDTLAKPTGND-L 849

Query: 835  PKLRFVEGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRAADHLVVC 894
                  +G  DA P W P        I +  + LK   + EYRRLLYVAMTRAAD L +C
Sbjct: 850  LLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREYRRLLYVAMTRAADRLYIC 909

Query: 895  GYRGQKENPE-CWHAIVKAALAENQDHCQPQAFSADGEEWQGLVWR---KSEARPALAPH 950
            G+   K   E CW+A++  ALA +    +     A G      V R     E  P  +P 
Sbjct: 910  GWETLKRPAEDCWYALIHDALAASAQTVEVPLLDATGALKDTEVLRLTCPQEGSP--SPS 967

Query: 951  KPAEPQQEEDHTLPPGLLAPLPALPSLPRPLSPSGAGTIIDDGADDLAVRSPLFGEKTEA 1010
              A P  EE          P P  P+  RPL+PS  G       D+ A RSPL G     
Sbjct: 968  DSAAPADEEGEAPAAWAALPPPLEPTPSRPLAPSHVG-------DEGAARSPLDGRGDPR 1020

Query: 1011 SSLALQRGKLVHRMLQALPDFAESEREEAARRYAERAARFWPATDRERLIQAVLRVLSEP 1070
              L   RG+L+H++LQ LP+  + +R  AARR+  R A    A +   L   VL VL +P
Sbjct: 1021 RFL---RGRLIHKLLQLLPELPDEDRGPAARRWLSRPAWALEAEEIGALSAEVLAVLDDP 1077

Query: 1071 AVQPAFSANSRAEVSIMGTMTLGRQHYAVSGRIDRLAVERDRVILVDYKTNRVPPREARE 1130
            A +  F+  SRAEV ++G +     ++ VSG++DRLAV  D V++VDYKTNR PPR    
Sbjct: 1078 AFRAVFAPGSRAEVPLVGLV----GNHVVSGQVDRLAVTDDEVLIVDYKTNRPPPRAVDL 1133

Query: 1131 LPFSHVAQLAIYREILAPLYPGKEFVCALIYTESAAFVRVDDDAMAE 1177
            +  +++ Q+A YR +LA ++P +   C L++T+    + +  + +AE
Sbjct: 1134 VDIAYIRQMAAYRALLAQVFPSRVARCVLLWTDGPFAMEIPAERLAE 1180