Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 1113 a.a., ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing from Dechlorosoma suillum PS

 Score =  270 bits (691), Expect = 4e-76
 Identities = 325/1199 (27%), Positives = 496/1199 (41%), Gaps = 178/1199 (14%)

Query: 29   ASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMSSRVFDRL 88
            A DP  S  V A AGSGKT +L  R++RLLL G  P  IL +T+T+ AA E+  RV   L
Sbjct: 11   ALDPRRSVVVEACAGSGKTWLLASRIVRLLLEGAAPGDILAITFTRKAAREIEERVMGWL 70

Query: 89   AEWATLPDSDLKDRITTIEGKVPDRIKLAEARRLFAKALETPGGLKIQTIHAFCEALLHQ 148
             + A +PD++    +    G   D   L  AR L+ +  +    L + T H +   L+  
Sbjct: 71   RDLAAMPDAEATVFLAE-RGMTADAGLLRRARGLYERVADAQPPLSVHTFHGWFLQLIAA 129

Query: 149  FPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQALAYVLDLADESGLEA 208
             PL + +AG   V    +   LL E  ++    +  + + EL      +L  A      +
Sbjct: 130  APLVSGLAGSSLV---ESTGRLLEELWQNFAAELQADPEGELAGHFTALLQGAGLDSTRS 186

Query: 209  LLSAIIANRSALRSFLHEAKQSGGLDVRLRQEMQIAAGETEETAAEAFWPLPGLSGLVLD 268
            LL  ++  R+   ++     ++G      + +  +  GE  E     F P     G   D
Sbjct: 187  LLMRLVGRRAEWLAYT-GGTENGVAHALEQLQALLGVGEAGEGLKAFFAP-----GWEAD 240

Query: 269  TYLTLAD-EVGGSRVIEVAYALREAKRQPD--PVRRMELIEAALLTAKG---EKKSDAYV 322
             +  L   E   ++  +   A   A  QP   P      + + LLT  G    +K    +
Sbjct: 241  YHAYLGFLEQSETKTDQALVAPLRAALQPGAAPEAAFAALGSVLLTQTGTLRSRKPSGAL 300

Query: 323  INKGMQKSAPDLVDALTLARDHVVACRNRYRLVRMLVATKSALVLAERLIGDFEDLKKQR 382
              +     A   +D        ++A R   R  ++L   +  L L    +   E  K+ R
Sbjct: 301  DKRFGSDGAARFLDLHQRLGQSLLATREVLRAEQILEFNRHGLSLGAAFLERLEKHKQAR 360

Query: 383  SQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTSPVQWSIIQSLAADFF 442
              +DF D   +   LL  +   A++  +LD    HIL+DE QDT+P+QW I+ +    + 
Sbjct: 361  RLIDFVDAEWQVLQLLQDEGHAAFLQARLDARYKHILLDEFQDTNPLQWQILLAWLDAYT 420

Query: 443  NGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETKRRVDQVEQAFHRIRLPLSF 502
            +G+        LF VGD KQSIY F+ A P  F+   D  +           R+    + 
Sbjct: 421  HGDGGE--APCLFLVGDPKQSIYRFRQAEPRLFATAADFLEHNF-----GARRLAQDATR 473

Query: 503  RSTEDVLAAVDQVFSDPKNASGLSADNEPVEHRSNRAGH-PGTVEVWDMVAPETTEDEED 561
            R+   V+  V+ +FS     +G          +S+ AG  PG VE+  +V+    E++  
Sbjct: 474  RNARSVVEVVNALFSVEPAFTGF-------RPQSSLAGQLPGRVELLPLVSLAEEEEQSA 526

Query: 562  WTAPFDALRESAPATIV--------ARRIAARIADMIGNQTIIEKGVERAVEPGDILVLV 613
              A  D L  + PAT          A R+AAR+   +    + E   ER    GD+++LV
Sbjct: 527  GAALRDPL--TTPATEATDPRRDEEAARLAARLQQFMATLRVKEGEGERPARWGDVMLLV 584

Query: 614  RKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVLPEDDLSLAALLK 673
            RKR     A  R LK    IP   A R  L   +  +D+ AL  F+VLP  DL+LA +L+
Sbjct: 585  RKRTQLA-AYERALK-AAGIPYLAASRGGLLQTLEARDIAALFEFLVLPSADLALAQVLR 642

Query: 674  SPLFNLTEDDVFEIAATRSEAESVWQRLQVL--SGEETSRLSIVTDKLRHFISLSKTATV 731
            +PLF + +DD+ ++AA  +     W+RL  L   GE   RL+     L  ++  +     
Sbjct: 643  TPLFAVGDDDLLQLAA--AGPGPWWERLMGLCNRGEARPRLARAFALLDGWLKAADVLPA 700

Query: 732  HDFFAAVLTLHDG------RKKFLGRLGNEASDVLDEFLSFALDHERTGLPGLQAFLSVL 785
            HD    V   H G      R+     L       L   L  ALD +    P L  F+  L
Sbjct: 701  HDLLDRV--FHQGELLARYREAVPAALWPGVEANLLALLQLALDLDGGRYPSLPRFIDEL 758

Query: 786  ----ETDSPE------VKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSHVP 835
                + D+ E      V+ + +  +G VRI+T+HA+KGLEAP+V+++D  ++        
Sbjct: 759  SRLRDADADEAPDEGIVEGDSNDGQGRVRILTIHAAKGLEAPIVWLLDANAEG------- 811

Query: 836  KLRFVEGDGDAFPV---WLPGSGFSNHL----IRSDE--------ERLKTAAEDEYRRLL 880
                  G  DA+ +   W P +    HL    I++D         E     AE E   LL
Sbjct: 812  -----GGPADAWSLLVDWPPQAPRPEHLSLYGIKADRGAAREPLFEGEAKLAEREELNLL 866

Query: 881  YVAMTRAADHLVVCGYRGQK-ENPE--CWHAIVKAALAENQDHCQPQAFSADGEEWQGLV 937
            YVA+TRA    V  G   +K ++PE   +  + +A +A        Q  +AD     G +
Sbjct: 867  YVAITRAKQVFVASGSAPKKGDSPENSPYQRLARALVA--------QGATADE---AGTL 915

Query: 938  WRKSEARPALAPHKPAEPQQEEDHTLPPGLLAPLPALPSLPRPLSPSGAGTIIDDGADDL 997
                 A  A+A                 G  A   +LP LP    P          A  L
Sbjct: 916  AYGDLALDAMA-----------------GSQAGSQSLPGLPEQWRP----------APFL 948

Query: 998  AVRSPLFGEKTEASSLALQRGKLVHRMLQAL-------PDF----AESEREEAARRYAER 1046
            AV     GE+          G L+H  L+ L       PD+      +   EA    AE 
Sbjct: 949  AVEP--VGERRLGPGEDALFGILLHGCLERLTAGLALEPDWWRKVGGATASEAGGEEAEA 1006

Query: 1047 AARFWPATDRERLIQAVLRVLSEP----AVQPAFSANSRAEVSIMGTMTLGRQHYAVSGR 1102
            AAR               R+++ P     + P+  A + AE+S                R
Sbjct: 1007 AAR---------------RLMARPELAFLLDPSLVARNEAEIS---------NAEGQVKR 1042

Query: 1103 IDRLAVERDRVILVDYKTNRVPPREARELPFSHVAQLAIYREILAPLYPGKEFVCALIY 1161
            +DRL    + V +VDYK++R   +   E    +  Q+A YRE+L PLY  K    AL++
Sbjct: 1043 VDRLVETPEAVWVVDYKSSRADTKRLAE----YRRQVAEYRELLTPLYGQKPVRAALVF 1097