Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 1259 a.a., exodeoxyribonuclease V, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 98.2 bits (243), Expect = 4e-24
 Identities = 207/916 (22%), Positives = 359/916 (39%), Gaps = 129/916 (14%)

Query: 26  QRLASDPAS-----SAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILC-----LTYTKA 75
           Q L  DP +     S  + A+AG+GKT+ ++   +RLLL       + C     +T+T A
Sbjct: 8   QALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLSCEQILVVTFTNA 67

Query: 76  AASEMSSRVFDRL-AEWATLPDSDLKDR-ITTIEGKVPDRIKLAEARRLFAKALETPGGL 133
           A  E+  R+  R+   +      ++ D  +  +  K P+  +    RR F  AL++    
Sbjct: 68  ATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPESERAIALRR-FDLALKSLDEA 126

Query: 134 KIQTIHAFCEALLHQFPLEANVAGHFS-VLDDRAATTLLAEARRSLLTAVSTEDDAELVQ 192
            I TIH FC+ +L     E+++       LDD   +  L  A R             L Q
Sbjct: 127 AIFTIHGFCQRILADLAFESSLLFESDFTLDD---SEFLHHAVRDFWREACYPLPEYLAQ 183

Query: 193 ALAYVLDLADESGLEALLSAIIANRSA--LRSFLHEAKQSGGLDVRLRQ-EMQIAAGETE 249
            +A   +  D  GL   L A++    A  L+     A+ +  L   +++ ++    G   
Sbjct: 184 IIAS--EFGDPDGLVKQLRALLGASEAKPLKPVQPFARLAESLSQSVQRFKLAWPRGRDA 241

Query: 250 ETAAEAFWPLPGLS-GLVLDTYLTLADEVGG-SRVIEVAYALREAKRQPDPVRRMELIEA 307
             A     PL G   G   D Y  LA+        I   + L        P++ +E +  
Sbjct: 242 LLALLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFIAFGHGL-------PPLKVLEALSL 294

Query: 308 ALLTAKGEKKSDAYVINKGMQKSAPDLVDALTLARDHVVACRNRYRLVRMLVATKSALVL 367
           + L            +NKG     P + +A  L  DH+       +L  ++ A K A + 
Sbjct: 295 SELK-----------LNKG--GVLPSVSEAPLL--DHME------QLATLINAIKPAFLF 333

Query: 368 AER--LIGDFEDLKKQRSQLDFEDLIER--AANLLNRDTAGAWVHYKLDQGIDHILVDEA 423
           + +  +   F   K+ ++ L  +DL+    AA L N DT    V  +        L+DE 
Sbjct: 334 SAKQGISERFAKQKQLKNVLTPDDLLTTLAAAMLANPDTLPKAVASRFPVA----LIDEF 389

Query: 424 QDTSPVQWSIIQ-----SLAADFFNGESARMGRRT-----LFAVGDEKQSIYSFQGARPE 473
           QDT P+Q++I        L     N  +     RT     L  +GD KQ+IY+F+GA   
Sbjct: 390 QDTDPLQFAIFSWIYQTRLGVKAQNSTAVEPKARTDSKLSLLMIGDPKQAIYAFRGADIY 449

Query: 474 RFSQERDETKRRVDQVEQAFHRIRLPLSFRSTEDVLAAVDQVFSD-PKNASGLSADNEPV 532
            + + R +T+              L  ++RS+ +++A V+ +F+  P      S   + V
Sbjct: 450 TYIEARRQTQA----------HYFLDTNYRSSRNLVAGVNHLFAQHPNPFISQSIPFDRV 499

Query: 533 EHRSNRAGHPGTVEVWDMVAPETTEDEEDWTAPFDALRESAPATIVARRIAARIADMIGN 592
           +  ++ A         +  A       E  T    A      A   A  I   + +    
Sbjct: 500 KTPASAAAKQLVESTANSAALRLKLLREGETGLNKASARQTLAEDTAAEITRLLTEAANG 559

Query: 593 QTIIEKGVERAVEPGDILVLVRKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDL 652
           Q    KG    +   DI +LVR R     A+ +    ++ I      R  + D +  +++
Sbjct: 560 QCHTPKG---PLIAKDIAILVRDRNE--AAVMKTALSKRQIGAVFLSRDSVFDTVEAREM 614

Query: 653 LALGRFVVLPEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAE----------SVWQRLQ 702
             + R +  P+D+ +L + L + L   + + +        + +           +WQ+  
Sbjct: 615 ALILRALASPKDERALRSALATALLGYSAEQIHAFNQDEEQRQMLLEQFFALHQIWQKRG 674

Query: 703 VLSGEETSRLSIVTDKLRHFISL-SKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLD 761
           ++       L+  T  +   +   S TAT            +G ++            L 
Sbjct: 675 IMPA--LLSLANATHMVARLLQTPSVTATADQDSEEPDEASNGERR------------LT 720

Query: 762 EF--LSFALDHERTGLPGLQAFLSVLE------TDSPEVKREQDKDRGEVRIMTVHASKG 813
           +F  L+  L  + T + G+ A L+  E      T + E +   + ++  V+I+T+H SKG
Sbjct: 721 DFRHLAELLQQKATEIDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKG 780

Query: 814 LEAPVVFVVDGGSKAFNHSHVPKLRF--VEGDGDAFPVW-LPGSGFSNHLIRSDEERLKT 870
           LE PV F+        N      + +   + DG    VW + G+         ++ + +T
Sbjct: 781 LEYPVCFIPFVSLARDNRRRPTPMLYHRTDADGAQELVWDIEGTDEG-----WEQAKQET 835

Query: 871 AAEDEYRRLLYVAMTR 886
            AED   RLLYVA+TR
Sbjct: 836 LAED--LRLLYVALTR 849