Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  274 bits (700), Expect = 4e-77
 Identities = 177/524 (33%), Positives = 283/524 (54%), Gaps = 15/524 (2%)

Query: 889  AKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSL 948
            A++EA  A+  KS FLANMSHEIRTP+N +LG   L+Q + ++ +Q  Y+   + +A +L
Sbjct: 275  ARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKSADNL 334

Query: 949  LGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAW 1008
            LG++N+ILDFSKI+AGKL LD  P ++  L++D   +L+       +E++  +    PA 
Sbjct: 335  LGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPAS 394

Query: 1009 LLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQI 1068
            L+ D LRL+QIL NL  NA+KFT  G ++V         +   ++ S+ D+GIG+S + +
Sbjct: 395  LVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDV 454

Query: 1069 ERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVM 1128
              +F  F QA++S +R+ GGTGLGL ISKRL+E MGG++ V S  G GS+FW  L  P  
Sbjct: 455  RTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNLPKA 514

Query: 1129 --EVEANPRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATAN 1186
              + EA P   L G R  +VD +++  + L   L D G  V   +   Q ++ V+ A+  
Sbjct: 515  HDDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYDQLLQGVQAASQA 574

Query: 1187 AQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPFV 1246
               F+  ++   + ++   Q      +     Y    V+L     + +      N     
Sbjct: 575  GLPFEFAVLGANLGNLSPEQLGHY--HQQLERYHCQCVVLCPTTEQALYHPYLPNG--HG 630

Query: 1247 NFLTKPVTSQILAEAVLNAIE-GKTMDANPKPRSQRLLAGLTLLVVEDNQLNREVIDELL 1305
              L+KP  ++ L   +L  ++  + +     P  QR      +L V+DN  N  ++  LL
Sbjct: 631  QLLSKPTCTRKLRRLLLELVQPRRPLAEGSNPNGQR---RPKILCVDDNAANLLLVKTLL 687

Query: 1306 TYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIRA---DGRFDQL 1362
               GA V+    G   V  V +  ++FD V+MD+QMP +DG   T +IR        + L
Sbjct: 688  EDLGAEVLAVNNGYAAVQAVQE--ELFDLVLMDVQMPGMDGRACTEQIRLWENTQSGNPL 745

Query: 1363 PILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLVG 1406
            PI+A+TA+A   +K+  L +GM+ +++KPI  +QL   +++  G
Sbjct: 746  PIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKWTG 789