Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 890 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score =  351 bits (900), Expect = e-100
 Identities = 230/622 (36%), Positives = 349/622 (56%), Gaps = 33/622 (5%)

Query: 885  TLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTA 944
            T R A+Q A+ AN AK+AFLA MSHEIRTPMN V+GM  L+  T L  +Q+ + T  + +
Sbjct: 241  TARQAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDS 300

Query: 945  AKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSA 1004
            A+SLL ++NDILDFSK++AGKL L+     +  L+  +  +L+       +E+   +D  
Sbjct: 301  AESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPD 360

Query: 1005 LPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGIS 1064
            LPAW+  D  RL+QIL+NLAGNA+KFT HG + + +        +  ++F + D+GIGI 
Sbjct: 361  LPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEVRDETSPDGAGRLRFDVRDTGIGIP 420

Query: 1065 EEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLT 1124
            ++ I R+F+ F Q ++ST+RR+GGTGLGLAISKRL E+MGG + V S  G GS FWF L 
Sbjct: 421  QDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGAGSLFWFSLP 480

Query: 1125 FPVMEVEANPRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQAT 1184
            F ++E     R DL+G RILVVDD+ I  ++L + L  +G +V + +    A+ ++ +A 
Sbjct: 481  FQMVETAPPQRPDLAGRRILVVDDSPINRDVLERQLRGFGVIVASCADAESALAELGRAA 540

Query: 1185 ANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHI---N 1241
            A    ++  ++D RMP + G      ++        P++  +      +IA SQ +   +
Sbjct: 541  ATGTPWEAAIIDARMPGVTGSDLIGRIR------AEPVLAPMGL----IIASSQGLSPED 590

Query: 1242 NVPFVN-FLTKPVTSQILAEAVLNAIEGKTMD--ANPKPRSQ-----RLLAGLTLLVVED 1293
              P  + F+ KP+  Q +  AVL  + G   D      P S+     R    L +LV ED
Sbjct: 591  GSPKADAFIHKPLRRQTIL-AVLARVLGLPHDPGLQDSPESEPEAIPRPARRLRILVAED 649

Query: 1294 NQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRI 1353
            N +N++V   LL   G +V +A  G E V  V      +D V+MD+QMP++DGL+AT  I
Sbjct: 650  NPVNQQVAVGLLRKLGHSVDVAADGAEAVEAV--RSRPYDLVLMDVQMPEMDGLQATAAI 707

Query: 1354 RA-DGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLVGRDAAQF 1412
            RA  G  +++PI+AMTANA + D + CL+AGM+ ++SKPID ++L+  +       A   
Sbjct: 708  RALTGGAERVPIVAMTANAMRGDDRMCLDAGMDRYISKPIDRRKLMEVL-------AQYA 760

Query: 1413 AEPESMHLDAQHNLEGETLLDDIRLILRRFGGNQVFFEKMASSFAPEMIKQLSLFKQSTK 1472
            AEP +       N     +  D+  +L    G +   E +A  F     ++        +
Sbjct: 761  AEPPAAKPPQAENPAPSAVEIDVLDLLCEDLGVETVVEILAKFFEDATSREAECAAALAR 820

Query: 1473 TFDYATTAAISHAIKGIASNFG 1494
              D+      +HAIKG A++ G
Sbjct: 821  E-DHERVRREAHAIKGAAASLG 841