Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1021 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  274 bits (700), Expect = 4e-77
 Identities = 192/538 (35%), Positives = 280/538 (52%), Gaps = 31/538 (5%)

Query: 884  KTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQT 943
            + L  AK+ A+ AN AKSAFLA MSHEIRTPMN V+GML+L+ +T L   Q+  V+  + 
Sbjct: 493  EALTIAKENAEAANVAKSAFLAAMSHEIRTPMNGVIGMLELLDHTELDNDQRDLVSTTRE 552

Query: 944  AAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDS 1003
            +  SLL +L+D+LDFSKI+AG+L+L+  P  ++ ++  +   ++       + +   +D 
Sbjct: 553  SGLSLLRILDDVLDFSKIEAGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTLSAFVDP 612

Query: 1004 ALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTV-QFSIVDSGIG 1062
             LP  LLAD +RL+QIL NLAGNA+KFT  G V + +     + +   +    + D+GIG
Sbjct: 613  GLPPVLLADPVRLRQILFNLAGNAVKFTAQGLVAIHMGNGGTDGQGRQILSIRVADTGIG 672

Query: 1063 ISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFD 1122
            I     +R+F  F QAESST+RRFGGTGLGL+I++RLV+LM G     S+ GVGS FW  
Sbjct: 673  IDSSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGVGSSFWCR 732

Query: 1123 LTFPVMEVE------ANPRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQA 1176
            L  PV E             D  G RIL+VD +     +++      G  V    G  +A
Sbjct: 733  LPLPVAESVPPETPIGEQTTDFIGLRILIVDPDTEERTLIALATEQGGAAVVRVPGPREA 792

Query: 1177 IEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAE 1236
                ++ATA    FD+ L+       D +   E L   GT   TPL   L   G +    
Sbjct: 793  EAASRKATATQAPFDLALI-----TADSV-APEDLAPMGT---TPL---LFIDGQDPAHR 840

Query: 1237 SQHINNVPFVNFLTKPVTSQILAEAVLNAIEGKTMD-------ANPKPRSQRLLAGLTLL 1289
             Q       + FL +P+T   +  AV   I               P+PRS     G  +L
Sbjct: 841  FQLERRPNCLGFLGRPLTRAQITAAVERIIGPVAQPRPVCAPLPQPEPRS-TAWTGAPIL 899

Query: 1290 VVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEA 1349
            V ED+ +N++VI   L   G    +   G   +         +  ++ D  MP +DG + 
Sbjct: 900  VAEDHPVNQQVIRRQLHLLGFPAEVFPDGAAALAAW--RARPYCLILTDCHMPIMDGFQL 957

Query: 1350 TRRIRA--DGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLV 1405
            T  IRA  DG     PILA+TANA   + + C++AGM++++SKP+++  L   I  L+
Sbjct: 958  TAAIRAEEDGTTRHTPILALTANALAGEAERCVQAGMDSYLSKPVELPHLRAAISHLL 1015