Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1258 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  395 bits (1016), Expect = e-113
 Identities = 247/659 (37%), Positives = 380/659 (57%), Gaps = 28/659 (4%)

Query: 862  RQGHVIRVIGINIDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGM 921
            + G V+  +    DIT +++ +  L  A   A+ A+ AK+ FLANMSHEIRTPMNA++GM
Sbjct: 575  KDGTVVGTVVTFRDITERKRADALLHQALDRAEAASQAKADFLANMSHEIRTPMNAIIGM 634

Query: 922  LQLMQYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRD 981
              L   T L+ +Q+ YV K Q + + LLG++NDILDFSKI+AGKL ++     ++ ++ +
Sbjct: 635  SHLALKTELNPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVEKTAVHLDTVLDN 694

Query: 982  LAVVLSANHGNSDVEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLE 1041
            +A ++S       +E++FD+ S +P  ++ D LRL QILIN A NA+KFT  G+++V + 
Sbjct: 695  VANLISEKTIAKGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVKFTETGEIVVAVR 754

Query: 1042 CLRHEAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVE 1101
                  E+V ++F + D+GIG+S EQ+ R+F  F+QA++ST+R++GGTGLGLAIS++L E
Sbjct: 755  LAEDLGEAVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGGTGLGLAISRKLAE 814

Query: 1102 LMGGQLQVTSKVGVGSRFWFDLTFPVMEVEAN--PRADLSGYRILVVDDNQITTEILSKI 1159
            LM G++ V S+ G GS FWF              P+ DL G  +LVVDDN+    +L  +
Sbjct: 815  LMDGEVGVESQPGRGSTFWFTACLGKGRPRRALVPKPDLRGRHMLVVDDNENARAVLVDM 874

Query: 1160 LSDYGCVVETASGGYQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSY 1219
            L+     VE    G  A+ +V++  A A+ F+VV +DW+MP +DG++TA  +   G  S 
Sbjct: 875  LTSMSFRVEAVESGAAAVARVRE-VAGAKPFEVVFLDWQMPGMDGIETARAILGLGLTS- 932

Query: 1220 TPLVVMLTAYGHEVI---AESQHINNVPFVNFLTKPVTSQILAEAVLNAIEGKTMDANPK 1276
             P ++M+TA+G E +   AES  I +V     L KPV   I+ +AV+ A+ G  ++ +P+
Sbjct: 933  PPHMIMVTAHGREEVMKAAESAGIEDV-----LIKPVNPSIMFDAVMRAL-GAALEGDPE 986

Query: 1277 PRSQ---------RLLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLD 1327
              +            L GL +L+ EDN  N++V  ELL   G  V +AE G   V  V+ 
Sbjct: 987  EAAAGREVSDDALASLRGLRVLLAEDNDFNQQVATELLADGGVEVEVAENGKIAVDMVMA 1046

Query: 1328 SGDMFDAVIMDMQMPDIDGLEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAH 1387
            +   +D V+MDMQMP +DG+ ATR IR  G F  LP++AMTANA QAD+  C  AGMN +
Sbjct: 1047 A--PYDMVLMDMQMPVMDGVAATREIRRLG-FGDLPVIAMTANAMQADRDRCAAAGMNDY 1103

Query: 1388 VSKPIDMQQLLPNILRLVGRDAAQFAEPESMHLDAQHNLEGETLLDDIRLILRRFGGNQV 1447
            ++KPID  +L   +L+  G        P +         E +  + D   +   +  +  
Sbjct: 1104 LTKPIDPDELFACLLKWRGVAPTAVVAPAAPAGAVPLLPEIDPDVFDFERMGPIYKWDMA 1163

Query: 1448 FFEKMASSFAPEMIKQLSLFKQSTKTFDYATTAAISHAIKGIASNFGARRLAVHAAFLE 1506
                + ++F  +   +++  +  T   D A    ++H +KG A+  GA RL   AA +E
Sbjct: 1164 RLRPILAAFLDDAGTKVARLEAET---DLAALREVAHGLKGTANTAGALRLGRLAADVE 1219



 Score = 33.1 bits (74), Expect = 2e-04
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 21/180 (11%)

Query: 342 LAEQARRASMLEHSLD-GIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELI---VP 397
           LAE   R+ ++  S+D GI      G ++  N    R+ G+   E +G P   L     P
Sbjct: 468 LAEAEERSRLILGSVDEGICGLAQDGTMSFVNPAGARMLGYGLDEIVGKPLHALAHHTYP 527

Query: 398 PSIVLEEQ--ALFAEVLAGKTVLNRVSRHQRADGSNLSTSTTALPIYDEHGDIVGLSQTI 455
                  +  ++F     G+          R DG++     +  P+  + G +VG   T 
Sbjct: 528 DGTPFPRECCSMFLTSQDGQPRTEVDEVLWRKDGTSFPVEYSTTPVLKD-GTVVGTVVTF 586

Query: 456 RDITAQQDAERHILNLNASLERQVAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVI 515
           RDIT ++ A+              A    AL +A   +QA  D +    H   T ++ +I
Sbjct: 587 RDITERKRAD--------------ALLHQALDRAEAASQAKADFLANMSHEIRTPMNAII 632