Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  348 bits (894), Expect = 1e-99
 Identities = 244/713 (34%), Positives = 366/713 (51%), Gaps = 43/713 (6%)

Query: 846  DGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADTANAAKSAFLA 905
            DG    V+  A    DR   V  V+G   DIT +R +E+ LR AK+ A+  N  KS FLA
Sbjct: 427  DGSPLPVEYIASPVMDRGNQVGVVLGFR-DITQRRLVERQLREAKEAAEAGNRTKSEFLA 485

Query: 906  NMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGK 965
             MSHEIRTPMN V+GM  L+  T LS +Q+ +    + + +SLL ++NDILDFSK++AGK
Sbjct: 486  TMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGK 545

Query: 966  LKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWLLADQLRLQQILINLAG 1025
            L LD     +  L+  +  +L+       +E+   +D  L   + +D  RL+Q+L+NL G
Sbjct: 546  LDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGG 605

Query: 1026 NALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRR 1085
            NA+KFT  G V + +  L         +F + D+GIGI  E   R+F+ F Q ++ST+RR
Sbjct: 606  NAVKFTEKGGVSIEVSLLDGPDAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARR 665

Query: 1086 FGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEANPRADLSGYRILV 1145
            +GGTGLGLAIS+RL ELMGG++ V S VG GSRFW  L   ++  ++    DLSG+R+LV
Sbjct: 666  YGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPLELLAPQSAAPPDLSGHRVLV 725

Query: 1146 VDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQQFDVVLMDWRMPDIDGL 1205
            VDDN +  +++ + L  +G  V         + ++ +A A    ++V ++D +MP + G 
Sbjct: 726  VDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPVVTGS 785

Query: 1206 QTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPFVNFLTKPVTSQILAEAVLNA 1265
            +   M+      + T +VV       + +   Q+        FL KP+    L + +   
Sbjct: 786  EMVRMIHAIPMLAGTRIVVT----SSQGMPADQNDGQPAIDAFLHKPLRQSTLLDTIGRV 841

Query: 1266 I------EGKTMDANPKPRSQRLLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGI 1319
            +      E     A     S+     L +LV EDN +N++V   LL   G TV +   G 
Sbjct: 842  LGLTGPAERPADHAEEYKASEPAAKRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGA 901

Query: 1320 EGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIRA-DGRFDQLPILAMTANASQADKQE 1378
            E +  V      +D V+MD+QMP++DGLEATR IRA      Q+PI+AMTANA + D Q 
Sbjct: 902  EALEAVRLL--PYDVVLMDVQMPEMDGLEATRAIRALPLAAAQVPIVAMTANAMRGDDQM 959

Query: 1379 CLEAGMNAHVSKPIDMQQLLPNILRLVGRDAAQFAEP-------ESMHLDAQHNLEGETL 1431
            C +AGM+ ++SKPID  +L   + +  G    + AEP       +++  D    L  +  
Sbjct: 960  CFDAGMDGYISKPIDRHKLAEALAKYSGAPETKPAEPPAAPQNSKAVDRDVLDALAADIE 1019

Query: 1432 LDDIRLILRRFGGNQVFFEKMASSFAPEMIKQLSLFKQSTKTFDYATTAAISHAIKGIAS 1491
             D +  IL +F  +    +  A++ AP              T D       +H IKG A+
Sbjct: 1020 ADTVVEILVKFMEDARTRQNNAAALAP--------------TGDLEKVRREAHTIKGAAA 1065

Query: 1492 NFGARRLAVHAAFLEKQFKQEGLELLEIKRWTDTLESLINQSIEQLSGFLPKT 1544
            + G   +      LE+  +  G    +I R        ++Q IE L G L  T
Sbjct: 1066 SLGLLAVRDACLALEQAARAGGEVAPQIDR--------LHQDIEALPGLLAAT 1110



 Score = 48.9 bits (115), Expect = 3e-09
 Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 336 QRKQQVLAEQARRASMLEHSLDGIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELI 395
           Q + + LAE  R  S+LE   DGI+  DL G  T  N+ A +L  F   E +G   S+++
Sbjct: 338 QAEIERLAE--RNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVG---SDIL 392

Query: 396 VPPSIVLEEQALFAEVLAGKT--VLNRVSRHQRADGSNLSTSTTALPIYDEHGDIVGLSQ 453
              ++ L       ++L   T  + +  +  +R DGS L     A P+ D  G+ VG+  
Sbjct: 393 PLMALDLHTAEKLYQILLRLTESIRDDTASFKRRDGSPLPVEYIASPVMDR-GNQVGVVL 451

Query: 454 TIRDITAQQDAERHILNLNASLE 476
             RDIT ++  ER +     + E
Sbjct: 452 GFRDITQRRLVERQLREAKEAAE 474



 Score = 42.7 bits (99), Expect = 2e-07
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 26/166 (15%)

Query: 587 VFDEHGQVERFVALQTDITER-------KLAQIEKNRIATLLTNVLDAASEMTIIAADPQ 639
           VFD  G+   +    +DITE        K +Q E  R+A    ++L++  +  I+  D  
Sbjct: 307 VFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESVDD-GIVGIDLN 365

Query: 640 GIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHK 699
           G  T  NR A ++L +   E++G        +    A +  ++ +   + I+        
Sbjct: 366 GRATFVNRAAAKLLDFEPAELVGSDILPLMALDLHTAEKLYQILLRLTESIR-------- 417

Query: 700 AREEGSETRTWTYVRKDGSQLPISLSVTAM--RGND-GEILGYLGI 742
                    T ++ R+DGS LP+    + +  RGN  G +LG+  I
Sbjct: 418 -------DDTASFKRRDGSPLPVEYIASPVMDRGNQVGVVLGFRDI 456



 Score = 36.2 bits (82), Expect = 2e-05
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 409 AEVLAGKTVLNRVSRHQRADGSNLSTSTTALPIYDEHGDIVGLSQTIRDITAQQDAERHI 468
           A++ A +   + V   +  DG          P++D  G+  G   T  DIT + +AE  +
Sbjct: 275 ADMAARRPFRDFVYHTREMDGPGRFLRVNGKPVFDASGEFTGYRGTASDITEEIEAEERL 334

Query: 469 LNLNASLERQVAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHFCLISGY 528
               A +ER +A+R          N ++L++++  +     DL+G    VN     +  +
Sbjct: 335 KASQAEIER-LAER----------NNSILESVDDGI--VGIDLNGRATFVNRAAAKLLDF 381

Query: 529 AREELVG 535
              ELVG
Sbjct: 382 EPAELVG 388