Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  392 bits (1008), Expect = e-112
 Identities = 222/537 (41%), Positives = 327/537 (60%), Gaps = 15/537 (2%)

Query: 875  DITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQ 934
            D+T  R   +    AK  A+ A   KS FLANMSHEIRTPMNA++GM  L   T L  +Q
Sbjct: 695  DVTQARATAEAQARAKDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTDLDPRQ 754

Query: 935  QGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSD 994
            + YV K Q + + LLG++NDILDFSKI+AGKL+++     ++ ++ ++  ++S       
Sbjct: 755  KDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKG 814

Query: 995  VEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQF 1054
            +E++FD+ + +P  L+ D LRL Q+LIN A NA+KFT  G+++V +  +      V ++F
Sbjct: 815  LELLFDVGAGVPLDLMGDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPDVMLRF 874

Query: 1055 SIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVG 1114
             + D+GIG+++EQ  R+F  F QA++ST+R+FGGTGLGLAISK+L ELMGG + V S  G
Sbjct: 875  EVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPG 934

Query: 1115 VGSRFWFDLTFPVMEVEAN--PRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASG 1172
             GS FWF       +  A   P A+L G R+LVVDDN+    +L  +LS     V+    
Sbjct: 935  QGSTFWFTARLGKGKPRAPLIPEAELQGRRMLVVDDNENARAVLVDMLSAMSFEVDAVDS 994

Query: 1173 GYQAIEKVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHE 1232
            G +A++ ++ A  +   +DVV +DW+MPD+DGL+ AE + +     + P ++M+TAYG E
Sbjct: 995  GAKALDAIRDAVLDL-PYDVVFLDWQMPDMDGLEVAEQIHSIRL-PFPPHLIMVTAYGRE 1052

Query: 1233 VIAESQHINNVPFVNFLTKPVTSQILAEAVLNAIEGKTMDANPKPRSQ------RLLAGL 1286
             I +     ++  V  L KPV+   L ++++            +  S+        L GL
Sbjct: 1053 EIIKGAQAADIGEV--LIKPVSPAALFDSIMRVFASDQRRDEAEDVSEGGSVDHAALRGL 1110

Query: 1287 TLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDG 1346
             +L+VEDN LN+EV  E+L   G  V +A+ G+  V +      ++D ++MDMQMP +DG
Sbjct: 1111 KVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKA--RAGVYDLILMDMQMPVMDG 1168

Query: 1347 LEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILR 1403
            + ATR IR  G  D LPI+AMTANA QAD+ +CLEAGMN H++KPID   +   I R
Sbjct: 1169 VTATREIRRLGHVD-LPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMFSTISR 1224



 Score = 30.8 bits (68), Expect = 0.001
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 4/162 (2%)

Query: 447 DIVGLSQTIRDITAQQDAERHILNLNASLERQVAKRTHALQQALLENQALLDTINQQLHY 506
           D++ L     +I A+ +  + +L     L   +      +Q  L E QA+ +     + +
Sbjct: 543 DVLPLLAMRMEILARTERTQQLLAATRELAETLEANQTEIQSLLSEQQAIFEAATVGIAF 602

Query: 507 SVTDLDGVILDVNEHFCLISGYAREELVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHG 566
                + VI+  N     + GY   ELVG++  +  + +   A     +E +  G+    
Sbjct: 603 LK---NRVIVRGNPRLDKLFGYGPGELVGQSTRIWFADDAAFADVGGAYEALSRGEVHQR 659

Query: 567 EICNRGKDQQLKWFDTVIGSVFDEHGQVERFVALQTDITERK 608
           E     KDQ   W   + GS  D        V +  D+T+ +
Sbjct: 660 EQEYLRKDQSRFWC-RISGSAIDPSDLSRGTVWMLEDVTQAR 700