Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1196 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  318 bits (814), Expect = 3e-90
 Identities = 215/583 (36%), Positives = 310/583 (53%), Gaps = 27/583 (4%)

Query: 841  RILTTDG-EVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADTANAA 899
            R+  +DG E   + +AA+IE D +     VI  + DIT  ++ E  L  AK+ A+ A+ A
Sbjct: 479  RMRASDGHEFWAMLSAAEIEMDGEP---AVIASSTDITRHKEEEAALAEAKKVAEEASQA 535

Query: 900  KSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFS 959
            KS FLA MSHEIRTPMN VL M QL++   L  +Q+      + +A SLL ++NDILDFS
Sbjct: 536  KSLFLATMSHEIRTPMNGVLTMAQLLEDMPLPAEQREMARVIRDSATSLLTIINDILDFS 595

Query: 960  KIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWLLADQLRLQQI 1019
            KI+A KL+L+L   S+  ++  +A +L+       + ++  +D AL   ++ D +RL+QI
Sbjct: 596  KIEADKLQLELVDLSLSEVVEGVADLLTIRAQEKGISLITFVDPALTDMVVGDPIRLRQI 655

Query: 1020 LINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIERIFTGFEQAE 1079
            + NLAGNA+KFT  G V + +  L      + ++FSI D+GIG+  EQ  R+F  F QA+
Sbjct: 656  ITNLAGNAIKFTDKGYVRIAVRALDPRERPLRLEFSITDTGIGLDSEQQARLFEPFMQAD 715

Query: 1080 SSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEANPRADLS 1139
             + SRR+GGTGLGL+I +RLV +MGG++ V S VG GS FWF +     EVEA P  DLS
Sbjct: 716  ITISRRYGGTGLGLSICRRLVAMMGGEIGVRSNVGQGSTFWFQVPLEPAEVEAEPPLDLS 775

Query: 1140 GYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQQFDVVLMDWRM 1199
            G  +LV+ +  +  E L + L   G  V   +    A+  V+ A      +DV L+D   
Sbjct: 776  GIAVLVLAEGPVAAECLRQYLGHLGAQVAVVASAEGAVAAVRAAALAGWTYDVALLDGGQ 835

Query: 1200 PDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPFVNFLTKPVTSQILA 1259
                 L  A  L  A        V ML A      A +  +        L KP+  + L 
Sbjct: 836  DFRLRLGVAGALMTAAGPDLELKVAMLVAQ-DAFAAVASEVKAAGLYAVLPKPIRRRQLW 894

Query: 1260 EAVLNAIEGKTMDA------------NPKPRSQRLLAGLTLLVVEDNQLNREVIDELLTY 1307
              V  A+   T +A             P    +   AG  +LV EDN  N+ VI  L+  
Sbjct: 895  RNVAVAVGRATPEAEAADGTGAEEGWRPPTMEEAAAAGALILVAEDNPTNKVVIRHLMER 954

Query: 1308 EGATVVLAEGGIEG--VTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIR---ADGRFDQL 1362
             G  + +   G E     Q+ D G     ++ D  MP++DG E T+RIR    +   D L
Sbjct: 955  LGYAIEVVGNGTEAWERMQIRDYG----LLLTDCHMPEMDGYELTQRIREWEVETGHD-L 1009

Query: 1363 PILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLV 1405
            PI+A+TA+A     + CL++GMNA ++KPID+ QL   I RL+
Sbjct: 1010 PIVALTADALAGTARRCLDSGMNAFLAKPIDLVQLDSTIRRLL 1052



 Score = 38.5 bits (88), Expect = 5e-06
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 10/151 (6%)

Query: 1283 LAGLTLLVVEDNQLNREVIDELLTYEGATVVL---AEGGIEGVTQVLDSGDMFDAVIMDM 1339
            L+G+ +LV+ +  +  E + + L + GA V +   AEG +  V     +G  +D  ++D 
Sbjct: 774  LSGIAVLVLAEGPVAAECLRQYLGHLGAQVAVVASAEGAVAAVRAAALAGWTYDVALLDG 833

Query: 1340 QMPDIDGLE-ATRRIRADGRFDQLPILAMTA-NASQADKQECLEAGMNAHVSKPIDMQQL 1397
                   L  A   + A G   +L +  + A +A  A   E   AG+ A + KPI  +QL
Sbjct: 834  GQDFRLRLGVAGALMTAAGPDLELKVAMLVAQDAFAAVASEVKAAGLYAVLPKPIRRRQL 893

Query: 1398 LPNILRLVGRDAAQFAEPESMHLDAQHNLEG 1428
              N+   VGR     A PE+   D     EG
Sbjct: 894  WRNVAVAVGR-----ATPEAEAADGTGAEEG 919