Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  438 bits (1126), Expect = e-126
 Identities = 373/1219 (30%), Positives = 578/1219 (47%), Gaps = 95/1219 (7%)

Query: 455  IRDITAQQDAERHIL--------NLNASLERQVAKRTHALQQALLE---NQALLDTINQQ 503
            I++++A Q+A R  L          N +LE +V +RT  L+ +      ++ L+  +   
Sbjct: 441  IQELSAAQEAMREALLSSTTRLEEANTTLEARVLERTEELEHSKSTAEWSRQLMRDMADS 500

Query: 504  LHYSVTDLDGVILDVNEHFCLISGYAREELVGKTHAVLKSGEHDAAFWK----------- 552
            L  +    + V    ++ F  IS  A EE+ G T   L + E D  FW+           
Sbjct: 501  LPCAAFRFE-VAPSGDQSFRFISAKA-EEIWGYTPDELIN-EPDLRFWRIHPGDLAKAHQ 557

Query: 553  AMWEQIKAGKSWHGEICNRGKDQQLKWFDT-VIGSVFDEHGQVERFVALQTDITERKLAQ 611
            A+ E +  G S +       +  + +W +T  + S   +  +V     L  D+TER+ A 
Sbjct: 558  ALEEALLEGSSTNQLYRVMNRHGEARWIETRAMASRLADGTRVWNGYWL--DVTEREEAL 615

Query: 612  IEKNRIATLLTNVLDAASEMTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHI 671
                      + +  +A     +  D    I   N+   ++L Y   E+ G++T   F  
Sbjct: 616  AAMTGAMEEQSAIFQSAGLGIAVIRDRH--IVRSNKSLAQLLGYGPSELDGQSTGVVFAN 673

Query: 672  ADEIA--ARAAELSVEYGQKIQGFDTFVHKAREEGSETRTWTYVRKDGSQLPISLSVTAM 729
              +     R A  ++  G+  QG                 W Y RK+G+      S  A+
Sbjct: 674  EGDFERMGREAYPALAQGETFQG----------------DWEYRRKNGTTFWGRTSGRAI 717

Query: 730  RGNDGEILGYLGIGVDIS-------QIVAQQEALLTASNHLSKAA-EVAKLGIWTWNLLD 781
               D    G + +  DI+       ++   +E L   +N +  A  E+   G   W    
Sbjct: 718  DSGDLS-KGSVWVCDDITDRRNWEHRLQQAEERLRALTNSVPAAVFELRNEGEDFWFTF- 775

Query: 782  NSLQWNDRMFAMYDQPESLKQQGLSYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEPIFR 841
              +    R        + L   G  Y      V   D    E  ++ A+E    +   +R
Sbjct: 776  --MGRQVRGILGVGADQLLANAGRLYG----TVRDGDRETLESVIEGALEQGVRFSTQYR 829

Query: 842  ILTTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADTANAAKS 901
             L   GE R+V+  A +    Q       G   D++A++  E  L  AK+ A+ A   KS
Sbjct: 830  -LDAPGEERWVRMEA-VPIVAQAGGGTWAGFFQDVSAEKLAEAALTRAKELAEDATRMKS 887

Query: 902  AFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKI 961
             FLANMSHEIRTPMNA++GM  L   T L+ +Q  YV K Q+A + LLG++NDILDFSKI
Sbjct: 888  DFLANMSHEIRTPMNAIIGMSHLALKTELTPRQHDYVKKIQSAGQHLLGIINDILDFSKI 947

Query: 962  DAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWLLADQLRLQQILI 1021
            +AGKL ++     ++ ++ ++A +L+       +E++FD+ S +P  L+ D LRL QILI
Sbjct: 948  EAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPSEVPRTLVGDSLRLGQILI 1007

Query: 1022 NLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESS 1081
            N A NA+KFT +G++ +           V + F++ D+GIGI+ EQ  R+F  FEQA++S
Sbjct: 1008 NYANNAVKFTENGEIDIIARVKERSETEVLLYFAVRDTGIGITAEQAARLFQSFEQADTS 1067

Query: 1082 TSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEAN---PRADL 1138
            T+R+FGGTGLGLAISKRL ELMGG++ V S+ G GS FWF     +  V      P  DL
Sbjct: 1068 TTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFWFTARMGIGTVRKRRLLPSPDL 1127

Query: 1139 SGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQQFDVVLMDWR 1198
             G R+LVVDDN     +L+ +++     V T + G +A+++VK+A      +++VL+DWR
Sbjct: 1128 RGRRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWR 1187

Query: 1199 MPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPFVNFLTKPVTSQIL 1258
            MP +DG++TA  L   G     P ++M+TAYG E +     I      + L KPV++ IL
Sbjct: 1188 MPGMDGIETAHHLMALGLDP-APRLLMVTAYGREEVLNL--ITEAGIEDVLIKPVSASIL 1244

Query: 1259 AEAVLNAI-----EGKTMDANPKPRSQRL--LAGLTLLVVEDNQLNREVIDELLTYEGAT 1311
             + ++        E + +D         L  + G  +L+VEDN LN++V  ELL   G  
Sbjct: 1245 FDTIMRLFGCQPAEPRDVDGGHSSSEMHLETIRGARILLVEDNDLNQQVATELLGDAGFQ 1304

Query: 1312 VVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIRADGRFDQLPILAMTANA 1371
            V +A+ G   + +V    + +D V+MDMQMP +DG+ ATR IR  G+FD LPI+AMTANA
Sbjct: 1305 VDVADDGAIALAKV--RRNAYDMVLMDMQMPVMDGVAATREIRRLGQFDHLPIVAMTANA 1362

Query: 1372 SQADKQECLEAGMNAHVSKPIDMQQLLPNILRLVG---RDAAQFAEPESMHLDAQHNLEG 1428
             Q D+  CL+AGMN  ++KPID  QL   +LR +      AA            +H++  
Sbjct: 1363 MQRDRDRCLDAGMNDFITKPIDPDQLWAALLRWIAPRHSPAAAHGASAPSETGEEHSIPR 1422

Query: 1429 ETLLDDIRLILRRFGGNQVFFEKMASSFAPEMIKQLSLFKQSTKTFDYATTAAISHAIKG 1488
               L D    LRR  G    +      FA          + + +  D++T   ++H  KG
Sbjct: 1423 IDGL-DTTTGLRRVQGKTRLYLTSLRKFAAGRKSVAGDIRAALEADDWSTAERLAHTTKG 1481

Query: 1489 IASNFGARRLAVHAAFLEKQFKQEGLELLEIKRWTDTLESLINQSIEQLSGFLPKTQLKQ 1548
            +A   GA  +   AA LE     + L   E++   D + + +   I  L   LP  +   
Sbjct: 1482 LAGMIGADEVQRRAADLEAALCDK-LSRQEVEDLLDAMAAPLAALIAALDSTLPPEE--- 1537

Query: 1549 SQSSESANGVVDIQSVRAELDNLASLLQENNLEAVTLVDKLAKPLSQ--HPQWTELNGQV 1606
                  A   +D  ++ A    L  LL E++ EA  +++  A  L       +  +   +
Sbjct: 1538 ----TIAPVAIDRAALDAACQRLLILLAEDDAEADDVLEANAGLLQTAFPDHFPRIRAAI 1593

Query: 1607 QSLAFMQALETLRAMMLEN 1625
            +   F QAL TL   +  N
Sbjct: 1594 KDFNFDQALATLTEAVQRN 1612