Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1231 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

 Score =  287 bits (734), Expect = 6e-81
 Identities = 203/670 (30%), Positives = 332/670 (49%), Gaps = 52/670 (7%)

Query: 787  NDRMFAMYDQPESLKQQGLS----YEHWRMRVHPDDVIEAEETLKRAVEHDEPYEPIFRI 842
            N+ M  M+D P  L ++G +    + H   R       EA ETL+   E+     P   +
Sbjct: 571  NEAMARMFDVPPHLLEKGRNWAGFFAHCAGRGDFGTAAEAGETLRIWRENIAANRPFSWL 630

Query: 843  LTTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADTANAAKSA 902
            +   G+     +   +E         +I I  D+T  +  E+ L+     A+ A+ AKS 
Sbjct: 631  VHVAGK-----SWLNLEATNSSGNYWLI-IVTDVTEMKVREEELQRLLSRAEAADRAKSE 684

Query: 903  FLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKID 962
            FLANMSHEIRTPMN VLGM +L+  + L  +Q+ +      +  +LL ++NDILDFSKI+
Sbjct: 685  FLANMSHEIRTPMNGVLGMAELLAKSKLDTRQKTFTDIIVKSGNALLTIINDILDFSKIE 744

Query: 963  AGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWLLADQLRLQQILIN 1022
            AG++KL   P      + D+  +LS+     D+E++  +D+++   ++ D  R +QI+ N
Sbjct: 745  AGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIVRIDASVSGKVIGDAGRFRQIVTN 804

Query: 1023 LAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESST 1082
            + GNA+KFT  G V+V L     EA        + DSGIGI  +++E IF  F Q + S 
Sbjct: 805  IVGNAVKFTETGHVLVELSAQSAEASESIFSLRVEDSGIGIPVDKLETIFDKFSQVDGSA 864

Query: 1083 SRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEANP---RADLS 1139
            +RR  GTGLGLAI+  LV L  G++ V S+VG GS F  D+ F VME   +       + 
Sbjct: 865  TRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGSAFEVDIPFQVMERRRDVPLLSVAID 924

Query: 1140 GYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATANAQQFDVVLMDWRM 1199
              R+LV+DDN +   IL++ L  +G        G   I  +++A +     D +++D+ M
Sbjct: 925  DIRVLVIDDNDVNRRILTEQLRSWGIDGHAVENGPSGIAVLQEAASLGFAIDAIILDYHM 984

Query: 1200 PDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQHINNVPFVNFLTKPVTSQILA 1259
            P ++GL   E ++ A        +V LT+   +V+ +     ++     L KP  +++L 
Sbjct: 985  PVMNGLDVVERIR-ADKRFDDIAIVFLTSM--DVVGDETLFTDLSVQAHLMKPARARLLR 1041

Query: 1260 EAVLNAI-------------------EGKTMDANPKPRSQRLLAGLT-----------LL 1289
              + + +                   E    ++ P  + QR  A  T           +L
Sbjct: 1042 STLFDVVRDVRLKRIRQHPLAQGTGGEKARPESRPAEKKQRAEAPATVPERSRPCLLDVL 1101

Query: 1290 VVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEA 1349
            V EDN +N+ V  ++L   G   ++   G   V    +       ++MD+ MP ++G +A
Sbjct: 1102 VAEDNDVNQIVFSQILQQAGLRFLIVGNGKRAVQAWEEYNPAL--ILMDVSMPVMNGHQA 1159

Query: 1350 TRRIR----ADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLV 1405
            T+ IR    A G    +P++ +TA+  +AD++ CLEAGM+ ++SKPI  + L   I + +
Sbjct: 1160 TQAIRAAEQAAGDSRHVPVIGVTAHTQEADRERCLEAGMDDYLSKPISPESLEDKIAQWL 1219

Query: 1406 GRDAAQFAEP 1415
            G +  +   P
Sbjct: 1220 GENVLRRDAP 1229