Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1767 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella sp. ANA-3

 Score =  430 bits (1105), Expect = e-124
 Identities = 342/1306 (26%), Positives = 608/1306 (46%), Gaps = 87/1306 (6%)

Query: 350  SMLEHSLDGIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELIVPPSIVLEEQALFA 409
            ++LE + + ++  +  G+I   N   + LFG+     LGL    L+         +    
Sbjct: 516  AVLEAAPEAMLIVEQMGSIVFTNTRCQILFGYDANSMLGLQVESLLPEAMRSNHARDRLQ 575

Query: 410  EVLAGKTVLNRVSRHQRA---DGSNLSTSTTALPIYDEHGDIVGLSQTIRDITAQQDAER 466
             +  G+      +RH RA   DG           +  +H     ++ +IRD+T +   E+
Sbjct: 576  FLREGRDRPMANARHVRALKADGGEFVAEIALSILPADHEGRRQVAASIRDMTQKLAVEQ 635

Query: 467  HILNLNASLERQVAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHFCLIS 526
             I +        V     A+ +  + +  +++                   V+++   I+
Sbjct: 636  KIRDSELRFRGLVTNIPGAVYRTRIGDVWVMEY------------------VSDNIADIT 677

Query: 527  GYAREELVG---KTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEICNRGKDQQLKWFDTV 583
            G+A  + +    +T A L   E      + +   +   +++  E   R +D  ++W    
Sbjct: 678  GFAASQFIENRQRTFASLILEEDRELCHQHIDRALAQQETFEVEYRIRHRDGSIRWVHEK 737

Query: 584  IGSVFDEHGQVERFVALQTDITERKLAQIEKNRIATLLTNVLDAASEMTII----AADPQ 639
              + + E G    F     DITE KLA +E       LTN+ ++    T+      +   
Sbjct: 738  GKASYTEEGFPLWFDGSIDDITESKLAMVELEASRLQLTNITESIP-CTVYQLRWVSPAD 796

Query: 640  GIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHK 699
               T  +  A  ML    E+++         I DE             ++ +       K
Sbjct: 797  HTFTFLSGAAFHMLGLHREDLLKDFNIIAERIFDE-------------ERPEVVRALAGK 843

Query: 700  AREEGSETRTWTYVRKDGSQLPISLSVTAMRGNDGEILGYLGIGVDISQIVAQQEALLTA 759
            + ++    R + Y   +GS   +    +    +DG I+ + G  +DI++  A +E L  +
Sbjct: 844  SEDKLQWVREFRYRHPNGSIRWMEAGASGHYNDDGAII-WNGYVMDITERKAIEEELAVS 902

Query: 760  SNHLSKAAEVAKLGIWTWNLLDNSLQWNDRMFAMYDQPESLKQQGLSYEHWRMRVHPDDV 819
              H     + + +GI   +     L  ND+      Q          ++   ++      
Sbjct: 903  EAHFKALFDGSTIGIVNVDAKGVILDCNDQYCEDMGQTRESLCGVPIFDVLSLQDKETAK 962

Query: 820  IEAEETLKRAVEHDEPYEPIFRILTTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQ 879
             +  E  +  V+H   Y      +  +GE  ++        D Q      +   +D+T  
Sbjct: 963  AQFRELAEGKVDH---YRGERSFIRPNGEPLWMTVNVSALFDSQKQFESAVVSMVDMTEL 1019

Query: 880  RQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVT 939
            + L   L  AK+EAD A+ AK  FLANMSHEIRTPMNA++GM QL   TAL  +Q+ YV 
Sbjct: 1020 KLLSDELLVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVE 1079

Query: 940  KAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMF 999
            K + A+KSLL ++NDILDFSKI+AGKL ++  P  ++ ++ DL+ + S    +  +E++F
Sbjct: 1080 KIERASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLF 1139

Query: 1000 DLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDS 1059
             +   +P  L  D LRL Q+LINL  NA+KFT  G+V++ L  +  + + V ++FS+ DS
Sbjct: 1140 AVAPNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDS 1199

Query: 1060 GIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRF 1119
            GIG++ +Q  ++F  F QA++ST+R++GGTGLGLAI K+LVELMGG + V S+ G GS F
Sbjct: 1200 GIGLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTF 1259

Query: 1120 WFDLTFPVMEVEANPRA-DLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIE 1178
            +F +   +   +    A +L G  ILV DDN    +I+   L   G  V+T   G +A+ 
Sbjct: 1260 YFTVKLQISSGQKLTVAQELEGMPILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVT 1319

Query: 1179 KVKQATANAQQFDVVLMDWRMPDIDGLQTAEMLKNAGTGSYTPLVVMLTAYGHEVIAESQ 1238
            +  Q     Q++ V L+DW+MP++DG++TA+ +K        P ++M++A+ ++      
Sbjct: 1320 RCIQ-----QEYAVALIDWKMPNLDGIETAKQIKQ--QAKKAPRILMVSAHANQDFL--S 1370

Query: 1239 HINNVPFVNFLTKPVTSQILAEAVLNA------IEGKTMDANPKPRSQRLLAGLTLLVVE 1292
             I  +    +++KP+++  L + ++N+      +  +    +  P+    L G  +L+VE
Sbjct: 1371 QIEELGLAGYISKPISASRLLDGIINSLGRAGVLPVRRQSESIDPKLLLPLKGKRILLVE 1430

Query: 1293 DNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRR 1352
            DN++N EV  E L   G  + +A  G   + ++      FD V+MD QMP +DG +AT+ 
Sbjct: 1431 DNEMNLEVATEFLEQVGIILSIATNGQIALDKL--EQQSFDLVLMDCQMPVMDGYQATQA 1488

Query: 1353 IRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLVGRDAAQF 1412
            +R      +LP++AMTANA   DK+ CL AGMN H++KPI++  L   +L+ +G  A+  
Sbjct: 1489 LRKRPELTELPVVAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLGGSASLV 1548

Query: 1413 AEPESMHL----DAQHNLEGETLLD-------DIRLILRRFGGNQVFFEKMASSFAPEMI 1461
               E   L        NL+ E+++        DI   L+    +   +++    F     
Sbjct: 1549 DNTEPSQLVDIPVKPINLDSESVVKWPEHPELDIDRGLQLVQNSTRLYQRSFDRFVTSQR 1608

Query: 1462 KQLSLFKQSTKTFDYATTAAISHAIKGIASNFGARRLAVHAAFLEKQFKQEGLELLEIKR 1521
              + L  ++           ++H +KG+A N  + +L   A  LE    ++     E + 
Sbjct: 1609 NVVDLINKALANDKRDDAVRMAHTLKGLAGNLSSSKLVELARQLELHLSEKS----EYQT 1664

Query: 1522 WTDTLESLINQSIEQLSGFLPKTQLKQSQSSESANGVVDIQSVRAELDNLASLLQENNLE 1581
              D +++L+    + +    P+ +    +S+ S +  +  +++   L  L   L++ + +
Sbjct: 1665 ELDQIQALVASICDAIERVKPQFE----ESTTSTSEQLSPEALVTALKQLRQSLEDADSD 1720

Query: 1582 AVTLVDKLAKPLSQHPQWTELN---GQVQSLAFMQALETLRAMMLE 1624
            AV  +D L KP      W +L+     +    F +A++ +  ++ E
Sbjct: 1721 AVAQIDAL-KPQVSSKLWLQLSPALTMINQYQFDEAVDLIDEVLAE 1765



 Score = 28.1 bits (61), Expect = 0.009
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 336 QRKQQVLAEQARRASMLEHSLDGI------ISYDLAGNITSWNQGAERLFGFTEPETLGL 389
           +R+Q +L  +  R + L   +DG+       S D +G +   ++G  ++ G + PE L  
Sbjct: 380 EREQAILDSRGNRFARL---IDGMSDKSFYCSLDPSGQLAQVSEGVTKVLGMS-PELLKR 435

Query: 390 PSSELIVPPSIVLEEQALFAEVLAGKTVLNRVSRHQRADGSNLSTSTTALPIYDEHGDIV 449
               L     +  +        L G+ V +       A G         LP+  + G+++
Sbjct: 436 KYQRLFTANPLNEKNWEYTDLALKGENVPSHQVELLDASGHPRMLDLFMLPLVSDTGELM 495

Query: 450 GLSQTIRDITAQQDA 464
            +     D+T Q  A
Sbjct: 496 SVEMLFTDVTEQFSA 510