Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 935 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella sp. ANA-3

 Score =  274 bits (700), Expect = 4e-77
 Identities = 212/677 (31%), Positives = 329/677 (48%), Gaps = 56/677 (8%)

Query: 889  AKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGYVTKAQTAAKSL 948
            AK+ A  A+  KS FLANMSHE+RTP+N V+G  + +  T L   Q  Y+   + +A +L
Sbjct: 290  AKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPLHSSQVDYINTIERSATNL 349

Query: 949  LGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAW 1008
            L ++NDILDFSK++AGK+ L+  P  +   + +   ++S +     +E++ D+   +P  
Sbjct: 350  LAIINDILDFSKLEAGKMVLENMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDN 409

Query: 1009 LLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRHEAESVTVQFSIVDSGIGISEEQI 1068
            +  D +R+ QI+ NL GNA+KFT  G V+V LE      + V ++  ++D+GIGI E Q 
Sbjct: 410  VNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDDQVVLRCDVIDTGIGIDENQQ 469

Query: 1069 ERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVM 1128
            + +F  F QA+SS SRRFGGTGLGL I+KRLV  MGGQ+  TS V  GS FWF L   + 
Sbjct: 470  DFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPLGLG 529

Query: 1129 EVEAN---PRADLSGYRILVVDDNQITTEILSKILSDYGCVVETASGGYQAIEKVKQATA 1185
            + +     P   L    +L  +   +T  ++S+ L  +    +T    +Q I  +    +
Sbjct: 530  QFQIGDSLPFEKLKDKTVLFYEPRVLTHSVISRQLKQW----DTKVTHHQHIPSLLTTLS 585

Query: 1186 NAQ-QFDVVLMDWRMPDIDGLQTAEML---KNAGTGSYTPLVVMLTAYGHEVIAESQHIN 1241
              + QFD VL+        G      L    N        L+V+      EV+  SQ I 
Sbjct: 586  TTEHQFDYVLL-----SCHGFSNPNQLVSTLNQAKSKTDCLIVLFDCQEQEVL--SQFIR 638

Query: 1242 -NVPFVNFLTKPVTSQILAEAVL-NAIEGKTMD--ANPKPRSQRLLAGLTLLVVEDNQLN 1297
             N   V  L+ PV+   LA  +L   +E   +   A   P +++    LT+L V+DN  N
Sbjct: 639  PNADVV--LSLPVSEHQLARNMLYPPMEYDILPPVAITVPAARQ---SLTVLAVDDNFAN 693

Query: 1298 REVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMPDIDGLEATRRIRADG 1357
             ++ID LL     TV+    G E V Q       FD + MD+QMP  DG+ AT++IR   
Sbjct: 694  LKLIDTLLNELVTTVIAVNSGEEAVKQA--KSRTFDLIFMDIQMPGTDGISATKQIRQGS 751

Query: 1358 RFDQLPILAMTANASQADKQECLEAGMNAHVSKPIDMQQLLPNILRLVGRDAAQFAEPES 1417
                 PI+A+TA+A   +++  L +GM+ ++ KPID   L   I R + R      +  +
Sbjct: 752  MNRNTPIIAVTAHAIAEERELILGSGMDGYLPKPIDEAALKAEINRWITRPKFTHFDLHT 811

Query: 1418 MHLD---AQHNLEGETLLDDIRLILRRFGGNQVFFEKMASSFAPEMIKQLSLFKQSTKTF 1474
            ++ D    Q N + +  LD +R++L                    + + +S  + +    
Sbjct: 812  LNWDLCLTQANHKSDLALDMLRMLL------------------DSLPQTVSAIETALSQN 853

Query: 1475 DYATTAAISHAIKGIASNFGARRLAVHAAFLEKQFKQEGL------ELLEIKRWTDTLES 1528
            D AT     H + G +   G          +E   K++        E+LE+      +ES
Sbjct: 854  DQATMLTTIHKLHGASCYCGVPTTQRLCQEIESALKRDARVEDLEPEILELLDELTKVES 913

Query: 1529 LINQSIEQLSGFLPKTQ 1545
               Q + QLS  +   Q
Sbjct: 914  AAKQVLSQLSAEITDDQ 930