Pairwise Alignments

Query, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

Subject, 1236 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella sp. ANA-3

 Score =  424 bits (1091), Expect = e-122
 Identities = 298/848 (35%), Positives = 463/848 (54%), Gaps = 57/848 (6%)

Query: 579  WFDTVIGSVFDEHGQVERFVALQTDITERKLAQ-IEKNRIAT--------LLTNVLDAAS 629
            WF  ++  +F+E+ Q    +A Q    ++ +A+  E+ + AT        LL ++LD+  
Sbjct: 410  WF-LLVSRIFEENKQYTHHLAEQNKRLDKLVARRTERLKDATERREREYALLRSLLDSIP 468

Query: 630  EMTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSVEYGQK 689
            E  I+  D +G     N+ AERML Y+  E+IG ++       +++       S E G +
Sbjct: 469  E-AIVFKDKEGNYLGCNKAAERMLGYTESEMIGLSS-------EDLT------SPEMGIR 514

Query: 690  IQGFDTFVHKAREEGSETRTWTYVRKDGSQLPISLSVTAMRGNDGEILGYLGIGVDISQI 749
            I+  D  + K R   +  R    V   G  + +           GE+ G + +  D+++ 
Sbjct: 515  IRAEDEQILKDR---TPLRYQEKVELAGKPVLLDTLKLPFYNRRGELQGLIAVWRDVTRE 571

Query: 750  VAQQEALLTASNHLSKAAEVAKLGIWTWNLLDNSLQWNDRMFAMYD-QPESLKQQGLSYE 808
                E L  +      A +  + G+W W L    +  N   ++M   +P        + +
Sbjct: 572  YESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYYSMLGYKPNEFPALVSAID 631

Query: 809  HWRMRVHPDDVIEAEETLKRAVEHD-EPYEPIFRILTTDGEVRYVQAAAKI-ERDRQGHV 866
                  HPDD I  EE   + +E+  + YE  FRIL  +G   +V +  ++ E    G  
Sbjct: 632  QL---THPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNGSYHWVLSRGRVVEFTADGQP 688

Query: 867  IRVIGINIDITAQRQLEKTLRNAKQEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQ 926
             R++G + DIT  +  E  L  AKQ+A+ AN  KS FLANMSHEIRTPMNA++GMLQL Q
Sbjct: 689  KRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQ 748

Query: 927  YTALSVQQQGYVTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVL 986
             T+L+ QQ+ Y+ KA  +A+SLL ++NDILDFSKI+AGKL+L+  P  ++ ++ D A+ L
Sbjct: 749  RTSLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVPFPLDKVL-DHALDL 807

Query: 987  SANHGNSD-VEVMFDLDSALPAWLLADQLRLQQILINLAGNALKFTPHGQVIVGLECLRH 1045
            +A       VE++          L  D LRL Q+LINL  NA+KFT  G++ +G E +  
Sbjct: 808  NALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGE 867

Query: 1046 EAESVTVQFSIVDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGG 1105
                +T++F + D+GIGIS++Q E++F  F QA+ ST+R++GGTGLGL+ISK LV +MGG
Sbjct: 868  RDHRITLKFWVRDTGIGISKDQQEKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGG 927

Query: 1106 QLQVTSKVGVGSRFWFDLTFPVM-EVEANPRA---DLSGYRILVVDDNQITTEILSKILS 1161
            ++QV S++GVGS F F ++F +  E +  P      L+  R LVVDDN    +I S ++ 
Sbjct: 928  KMQVQSELGVGSTFSFTISFEIAEEAKVEPLVVPEKLNNLRTLVVDDNPTALQIYSALMR 987

Query: 1162 DYGCVVETASGGYQAIEKVKQATANAQQFDVVLMDWRMPDIDG---LQTAEMLKNAGTGS 1218
            D+   V+TA+ G +A+ K+ +        D++L+DW MP++DG   +   + +   G  +
Sbjct: 988  DFHFEVDTAASGAEALYKLSR-----DPIDLLLLDWMMPEMDGGDVISAIDTMVAEGRIA 1042

Query: 1219 YTPLVVMLTAYGHEVIAESQHINNVPFVNFLTKPVTSQILAEAVLNAIEGK-----TMDA 1273
              P+++M+TAY  E +       NV  V  L KP  +  L + ++ A   +         
Sbjct: 1043 KRPIIIMMTAYAAEPLQHEVDSANVFAV--LQKPFKASSLFDEIIAAFADEPRLNVVQPI 1100

Query: 1274 NPKPRSQRLLAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFD 1333
            +  P  +    GL LL VEDN +N++V  ELL   G  VV+A  G +    ++DS   FD
Sbjct: 1101 DELPVEEGEHTGLVLL-VEDNFINQQVATELLKSAGYEVVVAGNG-QIALDIIDSRP-FD 1157

Query: 1334 AVIMDMQMPDIDGLEATRRIRADGRFDQLPILAMTANASQADKQECLEAGMNAHVSKPID 1393
            AV+MD+QMP +DGL A R +R     D LPI+AMTA+A   D+++ L AGMNAH++KPI 
Sbjct: 1158 AVLMDIQMPVMDGLTAARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIV 1217

Query: 1394 MQQLLPNI 1401
            + +L   +
Sbjct: 1218 LTELFETL 1225



 Score = 60.1 bits (144), Expect = 2e-12
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)

Query: 344 EQARRASMLEHSLDGIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELIVPPSIVLE 403
           E A   S+L+   + I+  D  GN    N+ AER+ G+TE E +GL SSE +  P + + 
Sbjct: 456 EYALLRSLLDSIPEAIVFKDKEGNYLGCNKAAERMLGYTESEMIGL-SSEDLTSPEMGIR 514

Query: 404 EQALFAEVLAGKTVLNRVSRHQRADGSNLSTSTTALPIYDEHGDIVGLSQTIRDITAQQD 463
            +A   ++L  +T L    + + A G  +   T  LP Y+  G++ GL    RD+T + +
Sbjct: 515 IRAEDEQILKDRTPLRYQEKVELA-GKPVLLDTLKLPFYNRRGELQGLIAVWRDVTREYE 573

Query: 464 AERHI 468
           +   +
Sbjct: 574 SAEQL 578



 Score = 46.2 bits (108), Expect = 2e-08
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 1283 LAGLTLLVVEDNQLNREVIDELLTYEGATVVLAEGGIEGVTQVLDSGDMFDAVIMDMQMP 1342
            L  L  LVV+DN    ++   L+      V  A  G E + ++  S D  D +++D  MP
Sbjct: 964  LNNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKL--SRDPIDLLLLDWMMP 1021

Query: 1343 DIDG---LEATRRIRADGRFDQLPILAM-TANASQADKQECLEAGMNAHVSKPIDMQQLL 1398
            ++DG   + A   + A+GR  + PI+ M TA A++  + E   A + A + KP     L 
Sbjct: 1022 EMDGGDVISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLF 1081

Query: 1399 PNIL 1402
              I+
Sbjct: 1082 DEII 1085