Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  271 bits (694), Expect = 5e-77
 Identities = 200/557 (35%), Positives = 304/557 (54%), Gaps = 47/557 (8%)

Query: 87  ASGRFQLTYYGTETGQM-LD-----SDPSIDRTGYDPRTRPWYKQAMNERGLILTKPYVD 140
           A GRF   +Y    G + LD     +D +I  TG   R   +Y  +   +      P   
Sbjct: 149 ADGRFLPWWYRNADGSLGLDKLADVNDQNILSTGV--RASEYYLCSKENKKACAIDPAPY 206

Query: 141 VAYNVLVVT-------MAQATSQGVVGGDLS---IASLVESVNRMTLPANGYAIMMHKDG 190
              N +V+        M     QG+VG DLS   I  ++ S ++      G   ++  +G
Sbjct: 207 KVGNAMVMLASFIEPIMIDGAFQGIVGADLSVNFIQDMLTSADQKLYNGAGEMALISSNG 266

Query: 191 TVIAY-KDASKAMKPVGQIDNDLNHDLPQQSRQAGTLLPMYFENEGRDKLVWGVDIPNTD 249
            ++AY KDASK  +    +  D N        +AG +     +  G  +L     I   D
Sbjct: 267 RLVAYTKDASKLGEKASDL-LDSNELTNLNQLKAGEVRYDIDKEHGHIELFLPFTIGQAD 325

Query: 250 --WELVIVL-------DKETLEAPLTDLLLTQ-FGLSAVVLLLSV--LAISWLVNL-LLG 296
             W L++ L       D + L++ L     T  FG++   LL++   L + WLV   +  
Sbjct: 326 ARWTLMLQLPLSAVMADSQKLQSDLEAQRKTDIFGMTIAGLLIAGIGLLVIWLVGHGIAR 385

Query: 297 PLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFV----GSQHQLISHIRQLA 352
           PL ++   L  IA G GDLT+R+  D  DE+G +A+ FN F+    G   Q++S +++++
Sbjct: 386 PLKQMVAMLNDIAQGEGDLTRRLTSDRADELGAIANGFNTFLIKLQGMITQVVSSVQKVS 445

Query: 353 SELDADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSA 412
              +  A+ +++TN      + +Q  E+  VATAV EM +   ++A NA   A AA  + 
Sbjct: 446 DSSEHTADIAIRTNQ----GVHKQMVEIDQVATAVHEMTATAQDVARNATQAAQAASHAD 501

Query: 413 ASSFQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQGIAEQTNLLAL 472
            ++ QG  +V  T +SI +LA+E+ +A  V++ L++ +++I++IL  I+GIAEQTNLLAL
Sbjct: 502 QAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENINAILTAIRGIAEQTNLLAL 561

Query: 473 NAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQM 532
           NAAIEAARAGEQGRGFAVVADEVR L+++TQ +T+E+   I+ LQ+ T   V +ME SQ 
Sbjct: 562 NAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQTMIQQLQQGTRDVVRVMEDSQS 621

Query: 533 LAGNSVEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDE 592
               SV+ A  AA+ALE ITQAV+VI+DM  QIA+AAEEQ+ V  +I +N + I  V +E
Sbjct: 622 RTDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQSAVAEDINRNVINIGQVANE 681

Query: 593 I------TEAAKSDLTQ 603
           +      + AA +DLT+
Sbjct: 682 VAGGADESSAASADLTK 698