Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  328 bits (842), Expect = 3e-94
 Identities = 204/626 (32%), Positives = 327/626 (52%), Gaps = 21/626 (3%)

Query: 9   KILISVVIALSLVISLLSWQSYSSQKSLLLQNSLEQVQRLGEQQAERIQEWLAGRQDIVG 68
           KIL++  + +    +L +  +   Q++ +  +    +Q +G+  A  IQ WL GR  +V 
Sbjct: 10  KILLAASLIVIAAFALFTLYNDYLQRNAIRDDLNNYLQEMGDVTASNIQTWLGGRIALVE 69

Query: 69  ALASKVEDNS-----LSALQQAQASGRFQLTYYGTETGQMLDSDPSIDRTGYDPRTRPWY 123
             A  +  N       S L+Q   +  F  TY G   G       +    G+DPR RPWY
Sbjct: 70  NAAQNIAINPEPSAVASLLEQKTLTSSFMATYVGDSKGAFTIRPDTKMPDGFDPRVRPWY 129

Query: 124 KQAMNERGLILTKPYVDVAYNVLVVTMAQATSQG-----VVGGDLSIASLVESVNRMTLP 178
           K A +  G  LT+PY+D A   L++++A  ++QG     VVGGDLS+ +LV+++  +   
Sbjct: 130 KGAQSSNGSTLTEPYIDAATGKLIISVATPSTQGTQSIGVVGGDLSLQTLVDNIGALNFG 189

Query: 179 ANGYAIMMHKDGTVIAYKDASKAMKPVGQIDNDLNHDLPQQSRQAGTLLPMYFENEGRDK 238
             GYA ++  DG V+ + D +  MK +  +      + P+ S     +     E  G+D 
Sbjct: 190 GMGYAFLVSADGKVLVHPDKNLVMKTLADV---YPKNTPKISADFSEV-----EANGKDN 241

Query: 239 LVWGVDI---PNTDWELVIVLDKETLEAPLTDLLLTQFGLSAVVLLLSVLAISWLVNLLL 295
           +V  + I   P+ +W+L I +DK+   A L++   +    + + +++ +  +  L+ +L+
Sbjct: 242 IVTFIPIKGLPSVNWDLGISVDKDKSFAMLSEFRTSAVIATFIAVVIIIALLGMLIRILM 301

Query: 296 GPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRQLASEL 355
            PL  +++A+  IADG GDLT+R+ +   DE G+L ++FNRFV   H  I  +      +
Sbjct: 302 QPLHLMTRAMQDIADGEGDLTRRLTIQNHDEFGMLGNAFNRFVERIHTSIREVSSATEHV 361

Query: 356 DADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQSAASS 415
           +  A R +  ++ ++     Q      VA A+ ++ +A  EIA NA   +  A  +   +
Sbjct: 362 NEVALRVVSASNSSMVNSDEQANRTNSVAAAINQLGAAAQEIARNAAQASHQASDARHLA 421

Query: 416 FQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQGIAEQTNLLALNAA 475
             G+++V +   ++N L+  ++ ++  IE L+    +I  IL  I  I++QTNLLALNAA
Sbjct: 422 EDGQQVVERNIKAMNQLSSMISASSSNIEALNSKTVNIGQILEVITSISQQTNLLALNAA 481

Query: 476 IEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESSQMLAG 535
           IEAARAGE GRGFAVVADEVR L+ RTQ+S Q+V   IE LQ    ++VS M  SQ  + 
Sbjct: 482 IEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQKMIEELQVGARESVSTMGESQRHSL 541

Query: 536 NSVEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVTDEITE 595
            SV+ AN A + L  +TQ +  I  M   +ATA EEQT V   I  +   I  +  E  E
Sbjct: 542 ESVDIANLAGERLNSVTQRIGEIDGMNQSVATATEEQTSVVESINMDITEINTLNQEGVE 601

Query: 596 AAKSDLTQAQALKARANDLNAQVATF 621
             +S L     L+ +A  L   V +F
Sbjct: 602 NLQSTLRACADLEQQAARLKQLVGSF 627