Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

Subject, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  253 bits (645), Expect = 2e-71
 Identities = 198/653 (30%), Positives = 318/653 (48%), Gaps = 49/653 (7%)

Query: 6   LKQKILISVVIALSLVISLLSWQSYSSQKSLLLQNSLEQVQRLGEQQAERIQEWLAGRQD 65
           +K K++++ V    + +SL++  S  + ++  +   ++   R   Q    I+++  G   
Sbjct: 3   IKNKLVLAFVSVAFIPVSLVAVISVMNARTEAVDQFIDGSTREIRQIDGNIRQFFDGTLQ 62

Query: 66  IVGALASKVEDNSLSALQQAQAS------------------GRFQLTY-------YGTET 100
            V  +A+     S++ L+  Q +                   R+  T+        G E 
Sbjct: 63  NVDQMATDSVYTSVNTLKNYQPADAASQPMPAEAQTVIERFARYGATHPAAAILSIGLED 122

Query: 101 GQMLD--SDPSIDRTGYDPRTRPWYKQAMNERGLILTKP--YVDVAYNVLVVT----MAQ 152
           G       DP + +  YDPRTRPWYK AM   G  +  P  Y D     LV T    +  
Sbjct: 123 GTYAKWPDDPQLAK--YDPRTRPWYKAAMASPGKTVRTPAYYYDKDDVALVGTARALLEN 180

Query: 153 ATSQGVVGGDLSIASLVESVNRMTLPANGYAIMMHKDGTVIAY-KDASKAMKPVGQIDND 211
             ++GV    +S+ +L E V  + L  +GY +M+ +DG V+   ++A+   KP+  +   
Sbjct: 181 GKAKGVFVVSVSLKNLTELVKSIKLGESGY-VMLVEDGVVLVDPRNAAHNFKPLKGLGAA 239

Query: 212 LNH--DLPQQSRQAGTLLPMYFENEGRDKLVWGVDIPNTDWELVIVLDKETLEAPLTDLL 269
                + PQ S         Y  N      VW    P   W  + +++   + A  T + 
Sbjct: 240 YAQLAETPQGSTDVVIDGVHYMAN------VW--TSPGLGWRYIGLIEHREVMAEATRMT 291

Query: 270 -LTQFGLSAVVLLLSVLAISWLVNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVG 328
            LT   +  +VL+  ++A ++   +++ P+G+VS  L  IA G GDL   ++V  +DE  
Sbjct: 292 YLTALIVGVLVLIFGLIAAAFS-KVIVKPIGQVSTGLQSIAQGEGDLRHELQVQGKDETA 350

Query: 329 VLADSFNRFVGSQHQLISHIRQLASELDADAERSLKTNHIAVAELQRQQQEVAMVATAVT 388
            LA  FN+F+ +  QLI HI   ++ L   ++ + +  H       RQ++ V +V+TA  
Sbjct: 351 ELAGWFNKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQREAVELVSTAFN 410

Query: 389 EMASATNEIAANAENTATAAQQSAASSFQGKELVNKTRSSINSLADEVAQATDVIEDLSR 448
           EM +  NE+A +    A +A+       +GK+ +  T  ++N L   + +++  + +L  
Sbjct: 411 EMVATANEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTESSQAMVELEA 470

Query: 449 HAQSISSILATIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQE 508
            ++SI+ IL TI+ IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR L++RT DST E
Sbjct: 471 GSRSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGE 530

Query: 509 VHATIETLQRTTAKAVSLMESSQMLAGNSVEDANAAAKALEEITQAVNVISDMAGQIATA 568
           +   + TL+  T +    M S   L+  SV    +A  + E I  +VN I D   QI+ A
Sbjct: 531 IEQLLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQNLQISAA 590

Query: 569 AEEQTQVTGEITQNTVAIKDVTDEITEAAKSDLTQAQALKARANDLNAQVATF 621
           AEEQ  V  EI ++   I D    +   A S    +  L   +++LN  V  F
Sbjct: 591 AEEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNLSDELNGLVGRF 643